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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:603.1 nTPM
HPA Brain:476.3 nTPM
GTEx:603.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

476.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 130.4
2816 Male, age 47, midline 160.6
2565 Male, age 75, midline 157.2
1981 Female, age 72, midline 136.2
2048 Male, age 55, midline 99.5
2194 Female, age 79, both hemispheres 98.6
Cervical spinal cord, dorsal horn
nTPM: 89.5
2173 Female, age 72, unknown 122.2
2297 Male, age 75, both hemispheres 118.6
2721 Male, age 90, both hemispheres 116.6
2296 Male, age 66, both hemispheres 74.0
1877 Male, age 55, unknown 72.1
2069 Male, age 47, both hemispheres 33.5
Cervical spinal cord, ventral horn
nTPM: 476.3
2098 Female, age 72, unknown 994.1
2480 Male, age 75, both hemispheres 762.7
2809 Male, age 90, both hemispheres 374.0
2820 Female, age 79, both hemispheres 291.9
2295 Male, age 66, both hemispheres 251.1
2068 Male, age 55, unknown 183.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

603.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 603.1
Samples: 159

Max nTPM: 4515.2
Min nTPM: 23.5
Std nTPM: 759.6
Median nTPM: 365.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 4515.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3691.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 3662.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3298.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 3217.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2641.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2635.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2513.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2340.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2272.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1866.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1837.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1733.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1689.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1303.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1241.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1182.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1177.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1144.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1082.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1062.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 973.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 965.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 930.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 923.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 905.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 893.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 884.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 875.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 869.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 845.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 835.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 814.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 801.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 783.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 778.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 762.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 747.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 730.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 723.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 710.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 676.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 670.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 669.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 636.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 635.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 617.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 610.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 603.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 602.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 600.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 593.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 592.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 583.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 579.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 578.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 573.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 543.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 533.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 532.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 530.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 506.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 481.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 475.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 473.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 460.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 451.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 430.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 419.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 417.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 415.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 415.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 405.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 395.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 391.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 391.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 387.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 386.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 379.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 365.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 355.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 353.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 350.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 334.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 328.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 322.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 321.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 317.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 310.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 308.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 306.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 298.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 295.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 283.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 275.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 267.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 249.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 248.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 247.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 241.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 236.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 232.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 229.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 223.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 223.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 214.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 213.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 207.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 199.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 197.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 185.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 181.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 170.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 169.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 166.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 165.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 163.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 160.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 159.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 153.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 139.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 139.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 128.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 124.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 122.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 118.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 109.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 108.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 107.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 98.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 94.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 89.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 89.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 86.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 82.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 82.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 75.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 69.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 68.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 67.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 63.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 61.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 51.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 49.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 43.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 41.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 36.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 29.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 28.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 25.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 23.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 23.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 0.0
FF:10181-103D1 60 years, female 0.0
FF:10159-103A6 76 years, female 0.0

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