We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT-ND4L
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MT-ND4L
CANCER LIVER CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
LIHC TCGA LIHC VALIDATION PROTEIN LIHC CPTAC
Dictionary
Liver cancer
Human cancer
Liver hepatocellular carcinoma
LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

MT-ND4L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 12756
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 8491.7
Number of samples 362
Samples
Sample Description pTPM
TCGA-WJ-A86L-01A 68 years, female, white, stage:Stage I, alive, 345 days 38350.3
TCGA-ZP-A9D4-01A 64 years, female, white, stage:'--, alive, 395 days 35661.7
TCGA-DD-A4NG-01A 77 years, male, white, stage:Stage IIIA, dead, 802 days 34754.1
TCGA-MR-A8JO-01A 34 years, male, white, stage:Stage I, alive, 330 days 34728.2
TCGA-NI-A8LF-01A 74 years, male, white, stage:Stage I, alive, 799 days 29249.2
TCGA-WX-AA47-01A 33 years, female, white, stage:Stage IIIA, dead, 556 days 27668.8
TCGA-DD-AACE-01A 62 years, male, asian, stage:Stage I, alive, 2184 days 27563.6
TCGA-CC-A7IF-01A 59 years, male, asian, stage:Stage IIIA, dead, 649 days 25463.0
TCGA-5R-AA1D-01A 17 years, female, white, stage:Stage IIIA, alive, 449 days 25426.5
TCGA-RC-A7SB-01A 53 years, male, asian, stage:Stage II, alive, 588 days 24336.4
TCGA-DD-A3A2-01A 76 years, female, white, stage:Stage I, dead, 2131 days 23304.9
TCGA-DD-AAD6-01A 66 years, male, asian, stage:Stage IIIA, alive, 672 days 22936.5
TCGA-DD-A73A-01A 71 years, male, white, stage:Stage I, alive, 728 days 22896.5
TCGA-LG-A9QC-01A 48 years, male, white, stage:Stage I, alive, 425 days 21475.4
TCGA-2Y-A9H2-01A 64 years, female, white, stage:Stage I, alive, 1731 days 21053.8
TCGA-G3-AAV1-01A 51 years, male, asian, stage:Stage IIIC, dead, 359 days 21052.0
TCGA-CC-A8HT-01A 74 years, male, asian, stage:Stage IIIA, dead, 140 days 20631.4
TCGA-BC-A10Z-01A 62 years, female, white, stage:Stage I, dead, 34 days 20583.4
TCGA-DD-AAEA-01A 65 years, male, asian, stage:Stage I, alive, 575 days 20150.1
TCGA-BC-A216-01A 62 years, female, white, stage:Stage IIIA, alive, 1351 days 19802.2
TCGA-CC-A9FS-01A 55 years, male, asian, stage:Stage II, alive, 211 days 19581.7
TCGA-K7-AAU7-01A 61 years, male, white, stage:Stage II, alive, 359 days 19180.3
TCGA-DD-A4NB-01A 25 years, male, white, stage:Stage I, alive, 989 days 19097.3
TCGA-DD-A4NI-01A 67 years, male, white, stage:Stage II, alive, 816 days 19041.6
TCGA-DD-AACA-01A 65 years, male, asian, stage:Stage I, alive, 2301 days 18832.3
TCGA-DD-A1EK-01A 64 years, female, white, stage:Stage IVB, dead, 558 days 18564.5
TCGA-DD-AAD8-01A 73 years, female, asian, stage:Stage I, alive, 1219 days 18467.4
TCGA-DD-AACX-01A 66 years, male, asian, stage:Stage II, alive, 170 days 17969.9
TCGA-DD-AADL-01A 58 years, male, asian, stage:Stage I, alive, 636 days 17960.9
TCGA-RC-A7SF-01A 66 years, male, asian, stage:Stage I, alive, 579 days 17667.1
TCGA-DD-AAW1-01A 55 years, male, asian, stage:Stage IIIA, alive, 1989 days 17385.2
TCGA-DD-A1EB-01A 72 years, female, stage:Stage I, alive, 2017 days 17379.9
TCGA-RC-A7SH-01A 42 years, male, asian, stage:Stage II, alive, 468 days 16890.0
TCGA-DD-AADA-01A 66 years, female, asian, stage:Stage I, alive, 1233 days 16881.8
TCGA-2Y-A9GU-01A 55 years, female, white, stage:Stage I, alive, 1939 days 16860.1
TCGA-DD-A73D-01A 68 years, female, white, stage:Stage II, alive, 693 days 16754.5
TCGA-NI-A4U2-01A 71 years, male, white, stage:Stage IIIA, dead, 1791 days 16566.3
TCGA-ZS-A9CF-01A 64 years, male, white, stage:Stage II, alive, 2412 days 16546.1
TCGA-DD-A4NE-01A 75 years, female, white, stage:Stage IIIA, dead, 660 days 16451.3
TCGA-DD-AADD-01A 51 years, male, asian, stage:Stage I, alive, 1231 days 16202.4
TCGA-DD-AAVW-01A 35 years, male, asian, stage:Stage I, alive, 2317 days 16140.5
TCGA-DD-AAEK-01A 51 years, male, asian, stage:Stage II, alive, 1067 days 16038.8
TCGA-DD-AAW3-01A 69 years, male, asian, stage:Stage I, alive, 1633 days 16020.9
TCGA-WX-AA46-01A 61 years, male, white, stage:Stage II, alive, 756 days 15834.7
TCGA-CC-A8HS-01A 18 years, male, asian, stage:Stage IIIC, dead, 300 days 15511.7
TCGA-DD-A11C-01A 69 years, male, white, stage:Stage I, alive, 662 days 15395.8
TCGA-BC-A10R-01A 66 years, female, white, stage:'--, dead, 308 days 15298.9
TCGA-FV-A3R3-01A 38 years, female, white, stage:Stage I, dead, 366 days 15293.8
TCGA-DD-A1EE-01A 73 years, male, white, stage:Stage IIIA, dead, 349 days 15167.9
TCGA-DD-AAD0-01A 73 years, female, asian, stage:Stage I, alive, 137 days 15145.9
TCGA-DD-A73B-01A 72 years, female, white, stage:Stage I, dead, 283 days 15019.2
TCGA-DD-A4NS-01A 61 years, female, white, stage:Stage I, dead, 2456 days 14984.0
TCGA-BC-A8YO-01A 66 years, female, white, stage:Stage IIIC, alive, 562 days 14959.8
TCGA-UB-AA0V-01A 69 years, female, white, stage:Stage I, alive, 314 days 14847.9
TCGA-DD-AACT-01A 69 years, female, asian, stage:Stage I, alive, 1562 days 14656.3
TCGA-DD-AAW2-01A 69 years, male, asian, stage:Stage I, alive, 1855 days 14635.6
TCGA-DD-A4ND-01A 56 years, female, white, stage:Stage I, alive, 2746 days 14623.4
TCGA-DD-A1EA-01A 68 years, male, asian, stage:Stage II, alive, 2415 days 14604.6
TCGA-G3-A3CH-01A 53 years, male, asian, stage:Stage IIIA, alive, 780 days 14544.8
TCGA-K7-A5RG-01A 66 years, male, black or african american, stage:Stage I, alive, 519 days 14543.2
TCGA-DD-A4NJ-01A 54 years, female, white, stage:Stage II, alive, 928 days 14494.9
TCGA-XR-A8TC-01A 43 years, female, white, stage:Stage I, alive, 1339 days 14464.1
TCGA-DD-A4NL-01A 46 years, male, white, stage:Stage I, alive, 1711 days 14452.2
TCGA-DD-AAE2-01A 51 years, male, asian, stage:Stage I, alive, 638 days 14431.9
TCGA-ED-A97K-01A 54 years, male, asian, stage:Stage IIIA, alive, 6 days 14282.1
TCGA-CC-A3MA-01A 61 years, male, asian, stage:Stage IIIA, dead, 303 days 14244.3
TCGA-DD-AA3A-01A 81 years, female, white, stage:Stage I, dead, 410 days 14096.8
TCGA-DD-A118-01A 77 years, female, white, stage:Stage II, alive, 3437 days 14066.1
TCGA-DD-A4NA-01A 67 years, female, white, stage:Stage IIIC, alive, 1008 days 13982.4
TCGA-XR-A8TD-01A 49 years, female, white, stage:Stage IIIB, alive, 1030 days 13974.6
TCGA-ZP-A9D0-01A 67 years, female, black or african american, stage:'--, alive, 1091 days 13928.9
TCGA-ED-A82E-01A 60 years, female, asian, stage:Stage IIIA, alive, 408 days 13815.1
TCGA-CC-A8HV-01A 51 years, female, asian, stage:Stage II, dead, 279 days 13792.8
TCGA-UB-AA0U-01A 60 years, male, white, stage:Stage II, alive, 327 days 13592.9
TCGA-DD-AAE1-01A 52 years, male, asian, stage:Stage I, alive, 552 days 13541.2
TCGA-QA-A7B7-01A 48 years, male, black or african american, stage:Stage II, alive, 94 days 13528.7
TCGA-2Y-A9GZ-01A 82 years, female, white, stage:Stage II, dead, 848 days 13425.9
TCGA-BD-A3ER-01A 62 years, male, white, stage:Stage II, alive, 1115 days 13364.7
TCGA-BC-A3KG-01A 68 years, female, white, stage:Stage II, alive, 680 days 13280.8
TCGA-2Y-A9GX-01A 68 years, male, white, stage:Stage I, alive, 2442 days 13132.0
TCGA-CC-A3MC-01A 54 years, male, asian, stage:Stage IIIA, alive, 363 days 12995.1
TCGA-G3-A6UC-01A 65 years, male, white, stage:Stage IIIB, alive, 671 days 12932.1
TCGA-DD-A4NK-01A 80 years, female, white, stage:Stage IIIA, dead, 1210 days 12579.8
TCGA-5R-AAAM-01A 65 years, female, white, stage:Stage II, dead, 46 days 12533.6
TCGA-4R-AA8I-01A 66 years, male, white, stage:Stage II, dead, 262 days 12420.7
TCGA-ED-A7XP-01A 53 years, female, asian, stage:Stage II, alive, 400 days 12415.4
TCGA-2Y-A9GV-01A 54 years, female, white, stage:Stage I, dead, 2532 days 12384.3
TCGA-BC-A3KF-01A 66 years, female, white, stage:Stage I, alive, 8 days 12372.5
TCGA-DD-AADW-01A 48 years, male, asian, stage:Stage I, alive, 587 days 12346.6
TCGA-DD-A1EC-01A 20 years, female, white, stage:Stage I, alive, 602 days 12298.7
TCGA-BC-A10T-01A 76 years, male, white, stage:'--, dead, 837 days 12296.1
TCGA-BC-A10Q-01A 72 years, female, white, stage:'--, dead, 1135 days 12231.7
TCGA-EP-A12J-01A 62 years, male, black or african american, stage:Stage I, alive, 570 days 12104.6
TCGA-RC-A6M5-01A 20 years, female, white, stage:Stage IVA, alive, 15 days 12065.6
TCGA-KR-A7K0-01A 65 years, male, white, stage:Stage I, dead, 65 days 12021.6
TCGA-ED-A4XI-01A 58 years, male, asian, stage:Stage II, alive, 819 days 11920.1
TCGA-DD-AAE6-01A 59 years, female, asian, stage:Stage I, alive, 141 days 11895.9
TCGA-ZS-A9CG-01A 55 years, male, white, stage:Stage II, alive, 341 days 11886.9
TCGA-BC-A10U-01A 69 years, male, white, stage:'--, dead, 837 days 11775.9
TCGA-DD-AAE9-01A 69 years, male, asian, stage:Stage I, alive, 722 days 11737.3
TCGA-DD-AAEG-01A 59 years, female, asian, stage:Stage I, alive, 719 days 11594.1
TCGA-DD-AADC-01A 53 years, male, asian, stage:Stage I, dead, 425 days 11488.3
TCGA-2Y-A9H6-01A 68 years, female, white, stage:Stage I, alive, 357 days 11441.9
TCGA-DD-AAVS-01A 56 years, male, asian, stage:Stage I, alive, 1823 days 11418.2
TCGA-DD-AAEH-01A 73 years, male, asian, stage:Stage I, alive, 784 days 11304.3
TCGA-DD-AAW0-01A 54 years, male, asian, stage:Stage I, alive, 2015 days 11270.3
TCGA-DD-AACS-01A 39 years, male, asian, stage:Stage I, alive, 1804 days 11265.2
TCGA-EP-A26S-01A 70 years, male, white, stage:Stage I, alive, 608 days 11251.3
TCGA-ZP-A9D1-01A 56 years, female, white, stage:'--, alive, 21 days 11145.3
TCGA-DD-AAED-01A 51 years, male, asian, stage:Stage I, alive, 763 days 11071.2
TCGA-2Y-A9HA-01A 70 years, male, white, stage:Stage II, dead, 36 days 11066.6
TCGA-DD-AACV-01A 53 years, male, asian, stage:Stage I, alive, 1531 days 11020.3
TCGA-ED-A7PX-01A 48 years, female, asian, stage:Stage II, alive, 6 days 10938.5
TCGA-BC-A10X-01A 52 years, female, white, stage:Stage IIIA, dead, 770 days 10922.6
TCGA-DD-A1EF-01A 57 years, female, white, stage:Stage I, dead, 394 days 10800.9
TCGA-CC-A7IH-01A 58 years, male, asian, stage:Stage IIIA, alive, 365 days 10800.5
TCGA-DD-A1EH-01A 23 years, male, white, stage:Stage III, alive, 1495 days 10491.8
TCGA-DD-A11B-01A 73 years, male, white, stage:Stage I, dead, 14 days 10484.5
TCGA-DD-AADG-01A 70 years, male, asian, stage:Stage IIIA, alive, 1145 days 10478.9
TCGA-G3-A7M8-01A 31 years, male, asian, stage:Stage I, alive, 430 days 10428.2
TCGA-BC-A112-01A 80 years, male, white, stage:'--, dead, 153 days 10300.0
TCGA-DD-A73F-01A 77 years, female, white, stage:Stage I, alive, 1085 days 10170.2
TCGA-WX-AA44-01A 64 years, female, white, stage:Stage I, alive, 615 days 10145.7
TCGA-CC-A7IE-01A 57 years, male, asian, stage:Stage IIIA, dead, 217 days 10118.4
TCGA-G3-A3CI-01A 71 years, male, white, stage:Stage I, alive, 180 days 10046.8
TCGA-DD-A3A4-01A 37 years, male, white, stage:Stage IIIA, dead, 612 days 10009.1
TCGA-DD-AAD1-01A 51 years, female, asian, stage:Stage I, alive, 564 days 9833.4
TCGA-DD-A4NF-01A 72 years, male, white, stage:Stage I, alive, 942 days 9781.6
TCGA-G3-A5SK-01A 58 years, male, white, stage:Stage I, alive, 744 days 9724.0
TCGA-DD-AADY-01A 55 years, female, asian, stage:Stage I, alive, 555 days 9723.7
TCGA-RC-A7SK-01A 59 years, male, asian, stage:Stage I, alive, 472 days 9704.3
TCGA-CC-A7IK-01A 59 years, male, asian, stage:Stage IIIA, dead, 262 days 9697.3
TCGA-DD-A3A6-01A 72 years, female, white, stage:Stage II, dead, 3258 days 9639.5
TCGA-DD-A114-01A 42 years, male, black or african american, stage:Stage II, dead, 1149 days 9593.3
TCGA-DD-AACZ-01A 63 years, female, asian, stage:Stage I, dead, 171 days 9560.2
TCGA-ZP-A9CY-01A 66 years, female, white, stage:'--, alive, 782 days 9433.7
TCGA-DD-A4NH-01A 65 years, female, white, stage:Stage IIIB, alive, 917 days 9384.9
TCGA-G3-A5SJ-01A 59 years, male, white, stage:Stage I, alive, 698 days 9350.9
TCGA-MR-A520-01A 58 years, male, white, stage:Stage I, alive, 229 days 9348.6
TCGA-2Y-A9H9-01A 70 years, male, white, stage:Stage I, alive, 697 days 9338.9
TCGA-DD-A4NV-01A 61 years, male, white, stage:Stage IIIA, alive, 2398 days 9290.2
TCGA-DD-A3A8-01A 75 years, male, white, stage:Stage II, dead, 11 days 9252.4
TCGA-EP-A2KC-01A 62 years, male, black or african american, stage:Stage I, dead, 19 days 9222.9
TCGA-DD-AAVY-01A 56 years, male, asian, stage:Stage IIIA, alive, 1970 days 9072.6
TCGA-DD-AAVZ-01A 38 years, male, asian, stage:Stage I, alive, 1900 days 9051.8
TCGA-2Y-A9GW-01A 64 years, male, white, stage:Stage I, dead, 1271 days 8953.8
TCGA-G3-A5SM-01A 58 years, male, white, stage:Stage II, alive, 520 days 8947.4
TCGA-DD-A4NQ-01A 60 years, male, white, stage:Stage II, dead, 373 days 8800.3
TCGA-WQ-A9G7-01A 71 years, female, white, stage:'--, alive, 30 days 8788.8
TCGA-DD-AADU-01A 60 years, male, asian, stage:Stage II, alive, 554 days 8788.3
TCGA-DD-AAD2-01A 66 years, male, asian, stage:Stage I, alive, 658 days 8767.7
TCGA-XR-A8TF-01A 74 years, male, white, stage:Stage I, dead, 693 days 8760.7
TCGA-2Y-A9GT-01A 51 years, male, white, stage:Stage I, dead, 1624 days 8760.6
TCGA-DD-AADB-01A 51 years, male, asian, stage:Stage I, alive, 1242 days 8610.2
TCGA-DD-AAEE-01A 55 years, male, asian, stage:Stage I, alive, 810 days 8454.5
TCGA-XR-A8TE-01A 16 years, male, white, stage:Stage IIIA, alive, 925 days 8407.8
TCGA-CC-A3MB-01A 36 years, male, asian, stage:Stage IIIA, dead, 315 days 8143.8
TCGA-DD-A11D-01A 57 years, female, white, stage:Stage I, dead, 1560 days 8106.9
TCGA-CC-5263-01A 35 years, male, asian, stage:Stage IIIA, dead, 129 days 8081.1
TCGA-DD-AADR-01A 58 years, male, asian, stage:Stage I, alive, 2028 days 8075.7
TCGA-CC-A7IL-01A 61 years, male, asian, stage:Stage IIIA, dead, 278 days 8065.0
TCGA-5C-A9VH-01A 70 years, male, white, stage:Stage I, alive, 322 days 8047.0
TCGA-G3-A25U-01A 63 years, female, asian, stage:Stage I, alive, 1636 days 8022.0
TCGA-G3-A5SL-01A 70 years, male, white, stage:Stage II, alive, 621 days 7980.4
TCGA-DD-AAEI-01A 72 years, male, asian, stage:Stage I, alive, 1531 days 7977.4
TCGA-DD-AADV-01A 50 years, male, asian, stage:Stage I, alive, 574 days 7938.7
TCGA-DD-AACQ-01A 50 years, male, asian, stage:Stage II, dead, 432 days 7922.0
TCGA-LG-A9QD-01A 68 years, male, white, stage:Stage IIIA, alive, 366 days 7892.0
TCGA-2Y-A9H8-01A 85 years, female, white, stage:'--, dead, 633 days 7866.4
TCGA-5C-A9VG-01A 58 years, male, white, stage:Stage II, alive, 328 days 7852.7
TCGA-DD-A115-01A 53 years, male, white, stage:Stage IIIA, dead, 2542 days 7805.3
TCGA-XR-A8TG-01A 58 years, male, white, stage:Stage I, alive, 898 days 7549.7
TCGA-DD-A4NR-01A 85 years, female, white, stage:Stage I, dead, 9 days 7533.5
TCGA-DD-A113-01A 55 years, female, white, stage:Stage II, alive, 2425 days 7495.7
TCGA-5R-AA1C-01A 57 years, male, white, stage:Stage II, alive, 520 days 7452.0
TCGA-DD-AADP-01A 45 years, male, asian, stage:Stage I, alive, 458 days 7431.1
TCGA-HP-A5MZ-01A 78 years, male, stage:Stage I, dead, 91 days 7300.5
TCGA-2Y-A9H5-01A 59 years, female, white, stage:Stage I, dead, 555 days 7242.7
TCGA-UB-A7MC-01A 59 years, male, white, stage:Stage IIIA, alive, 500 days 7150.7
TCGA-MI-A75H-01A 77 years, male, white, stage:'--, alive, 747 days 7150.4
TCGA-LG-A6GG-01A 79 years, female, white, stage:Stage II, alive, 387 days 7084.8
TCGA-ED-A459-01A 47 years, male, asian, stage:Stage II, alive, 910 days 7053.5
TCGA-DD-AAD3-01A 43 years, male, asian, stage:Stage I, alive, 1295 days 7021.7
TCGA-KR-A7K8-01A 57 years, male, stage:Stage I, alive, 906 days 6981.6
TCGA-ED-A627-01A 74 years, male, white, stage:Stage I, alive, 423 days 6973.6
TCGA-DD-A1ED-01A 68 years, male, white, stage:Stage I, alive, 2301 days 6927.7
TCGA-PD-A5DF-01A 58 years, female, white, stage:Stage IIIB, dead, 639 days 6918.7
TCGA-2Y-A9H0-01A 49 years, male, white, stage:Stage IIIA, alive, 3675 days 6913.4
TCGA-DD-AACN-01A 32 years, male, asian, stage:Stage I, alive, 1302 days 6895.3
TCGA-UB-A7MD-01A 67 years, male, black or african american, stage:Stage I, dead, 52 days 6865.7
TCGA-DD-A39W-01A 29 years, female, white, stage:Stage III, dead, 827 days 6853.6
TCGA-CC-5260-01A 61 years, female, asian, stage:Stage IIIC, dead, 87 days 6816.2
TCGA-2Y-A9GS-01A 58 years, male, white, stage:'--, dead, 724 days 6747.0
TCGA-G3-AAV7-01A 38 years, male, asian, stage:Stage II, alive, 361 days 6727.7
TCGA-ED-A8O5-01A 59 years, female, asian, stage:Stage IIIA, alive, 406 days 6565.0
TCGA-FV-A23B-01A 70 years, female, white, stage:Stage II, dead, 1852 days 6550.6
TCGA-CC-A5UD-01A 45 years, male, asian, stage:Stage IIIA, dead, 304 days 6473.1
TCGA-DD-A73E-01A 66 years, male, white, stage:Stage I, alive, 44 days 6454.2
TCGA-ZS-A9CD-01A 73 years, male, white, stage:Stage II, dead, 1386 days 6447.8
TCGA-ED-A66X-01A 35 years, male, asian, stage:Stage IIIA, alive, 406 days 6446.8
TCGA-DD-AACH-01A 69 years, male, asian, stage:Stage II, dead, 195 days 6283.7
TCGA-DD-A1EI-01A 46 years, male, asian, stage:Stage I, alive, 183 days 6245.9
TCGA-BD-A3EP-01A 75 years, female, black or african american, stage:Stage I, alive, 409 days 6237.9
TCGA-RG-A7D4-01A 69 years, male, black or african american, stage:Stage II, alive, 1098 days 6171.2
TCGA-GJ-A6C0-01A 75 years, female, white, stage:Stage II, dead, 31 days 6170.2
TCGA-ZS-A9CE-01A 79 years, female, white, stage:Stage II, alive, 1241 days 6154.9
TCGA-DD-AACU-01A 59 years, male, asian, stage:Stage I, alive, 1567 days 6140.6
TCGA-G3-A3CK-01A 61 years, male, asian, stage:Stage I, alive, 585 days 6109.7
TCGA-ZP-A9D2-01A 51 years, male, white, stage:'--, dead, 765 days 6020.4
TCGA-DD-AAVX-01A 38 years, male, asian, stage:Stage II, alive, 1718 days 5988.3
TCGA-DD-A4NO-01A 65 years, male, white, stage:Stage I, alive, 2245 days 5946.8
TCGA-ZP-A9CV-01A 59 years, male, white, stage:'--, dead, 1088 days 5892.0
TCGA-RC-A6M4-01A 74 years, female, white, stage:Stage IIIA, alive, 22 days 5889.4
TCGA-G3-A7M6-01A 60 years, female, white, stage:Stage I, alive, 632 days 5710.7
TCGA-DD-AACK-01A 70 years, male, asian, stage:Stage I, alive, 9 days 5676.7
TCGA-BC-A10Y-01A 76 years, male, white, stage:'--, dead, 711 days 5604.6
TCGA-ED-A66Y-01A 51 years, female, asian, stage:Stage IIIA, dead, 296 days 5499.1
TCGA-MI-A75E-01A 61 years, male, white, stage:Stage IIIC, alive, 507 days 5493.3
TCGA-GJ-A3OU-01A 59 years, male, white, stage:Stage I, alive, 879 days 5449.5
TCGA-DD-AAVR-01A 44 years, male, asian, stage:Stage I, alive, 2513 days 5422.7
TCGA-G3-A7M9-01A 70 years, male, white, stage:Stage IIIB, dead, 56 days 5398.5
TCGA-CC-A9FW-01A 68 years, male, asian, stage:Stage IIIA, alive, 248 days 5363.4
TCGA-G3-A7M7-01A 65 years, male, white, stage:Stage I, alive, 361 days 5290.6
TCGA-DD-AACW-01A 43 years, male, asian, stage:Stage I, alive, 1424 days 5290.0
TCGA-2Y-A9HB-01A 66 years, male, stage:Stage I, alive, 260 days 5207.8
TCGA-K7-A5RF-01A 64 years, male, white, stage:Stage I, alive, 631 days 5104.3
TCGA-RC-A7S9-01A 47 years, female, asian, stage:Stage I, alive, 640 days 5057.7
TCGA-G3-AAV4-01A 83 years, female, white, stage:Stage I, dead, 27 days 5047.5
TCGA-G3-AAV3-01A 58 years, female, white, stage:Stage II, alive, 412 days 4971.4
TCGA-DD-A73C-01A 65 years, female, white, stage:Stage IIIA, alive, 701 days 4949.0
TCGA-CC-5258-01A 48 years, male, asian, stage:Stage II, dead, 129 days 4942.7
TCGA-DD-AADK-01A 68 years, female, asian, stage:Stage II, alive, 1049 days 4857.9
TCGA-ED-A8O6-01A 50 years, female, asian, stage:Stage IIIA, dead, 56 days 4810.6
TCGA-GJ-A9DB-01A 68 years, male, white, stage:Stage I, dead, 67 days 4784.0
TCGA-DD-AAD5-01A 54 years, male, asian, stage:Stage I, alive, 1345 days 4754.5
TCGA-DD-A4NP-01A 32 years, male, white, stage:Stage I, alive, 3308 days 4742.7
TCGA-CC-A5UC-01A 63 years, male, asian, stage:Stage IIIA, dead, 347 days 4718.2
TCGA-BC-A110-01A 51 years, female, black or african american, stage:'--, dead, 2116 days 4682.7
TCGA-FV-A496-01A 84 years, female, white, stage:Stage I, alive, 10 days 4669.4
TCGA-G3-A3CG-01A 80 years, male, white, stage:Stage I, alive, 673 days 4604.1
TCGA-G3-A25Z-01A 58 years, male, asian, stage:Stage I, alive, 655 days 4602.9
TCGA-DD-AACY-01A 61 years, male, asian, stage:Stage I, alive, 1450 days 4579.1
TCGA-MI-A75C-01A 64 years, male, white, stage:Stage I, alive, 291 days 4573.5
TCGA-DD-A116-01A 68 years, male, asian, stage:Stage IIIA, dead, 1622 days 4548.9
TCGA-CC-A1HT-01A 50 years, male, asian, stage:Stage IIIA, dead, 101 days 4374.1
TCGA-DD-AAE3-01A 50 years, male, asian, stage:Stage I, alive, 566 days 4369.2
TCGA-BC-A10W-01A 50 years, male, asian, stage:'--, dead, 91 days 4292.2
TCGA-DD-AAVV-01A 56 years, male, asian, stage:Stage II, alive, 2455 days 4260.6
TCGA-EP-A3JL-01A 76 years, male, white, stage:Stage I, alive, 303 days 4197.8
TCGA-FV-A2QR-01A 75 years, male, white, stage:Stage I, dead, 581 days 4173.0
TCGA-FV-A3I0-01A 76 years, female, white, stage:Stage II, alive, 848 days 4154.9
TCGA-DD-AADF-01A 64 years, female, asian, stage:Stage I, dead, 115 days 4146.4
TCGA-CC-5261-01A 44 years, male, asian, stage:Stage II, dead, 97 days 4071.3
TCGA-2Y-A9H7-01A 81 years, female, white, stage:Stage I, alive, 1168 days 4060.1
TCGA-FV-A3R2-01A 75 years, male, white, stage:Stage I, dead, 194 days 4042.0
TCGA-DD-AADQ-01A 59 years, male, asian, stage:Stage II, alive, 436 days 3977.6
TCGA-DD-AACP-01A 64 years, male, asian, stage:Stage I, alive, 415 days 3976.3
TCGA-DD-A1EL-01A 23 years, male, black or african american, stage:Stage II, dead, 415 days 3969.3
TCGA-FV-A3I1-01A 81 years, female, white, stage:Stage II, dead, 247 days 3908.0
TCGA-CC-A8HU-01A 39 years, female, asian, stage:Stage IIIA, dead, 344 days 3844.7
TCGA-EP-A2KB-01A 46 years, female, white, stage:Stage I, dead, 596 days 3815.0
TCGA-UB-A7MB-01A 24 years, male, white, stage:Stage II, alive, 601 days 3803.7
TCGA-ED-A7PY-01A 20 years, female, asian, stage:Stage II, alive, 390 days 3797.1
TCGA-HP-A5N0-01A 90 years, female, stage:'--, dead, 752 days 3761.5
TCGA-BD-A2L6-01A 69 years, male, white, stage:'--, alive, 1363 days 3633.6
TCGA-G3-AAV2-01A 50 years, male, white, stage:Stage I, alive, 372 days 3553.4
TCGA-MI-A75I-01A 61 years, male, black or african american, stage:'--, alive, 630 days 3491.9
TCGA-CC-5264-01A 71 years, male, asian, stage:Stage IIIA, dead, 102 days 3486.0
TCGA-RC-A6M6-01A 75 years, male, white, stage:Stage II, alive, 9 days 3485.8
TCGA-G3-A5SI-01A 44 years, male, asian, stage:Stage II, dead, 768 days 3432.6
TCGA-O8-A75V-01A 54 years, male, stage:Stage I, alive, 538 days 3426.5
TCGA-ZP-A9CZ-01A 72 years, male, asian, stage:'--, alive, 706 days 3420.8
TCGA-ED-A7XO-01A 29 years, male, asian, stage:Stage IIIA, alive, 427 days 3385.2
TCGA-BC-A10S-01A 81 years, male, white, stage:'--, dead, 1423 days 3315.4
TCGA-DD-AAC8-01A 72 years, male, asian, stage:Stage I, dead, 16 days 3313.6
TCGA-3K-AAZ8-01A 65 years, male, black or african american, stage:Stage IIIB, alive, 396 days 3310.7
TCGA-DD-A1EJ-01A 71 years, female, white, stage:Stage IIIC, dead, 1005 days 3244.2
TCGA-T1-A6J8-01A 68 years, male, white, stage:'--, alive, 23 days 3237.2
TCGA-DD-AAVP-01A 48 years, male, asian, stage:Stage I, alive, 2752 days 3209.6
TCGA-DD-A3A5-01A 66 years, female, white, stage:Stage III, dead, 3125 days 3164.3
TCGA-DD-AACJ-01A 75 years, male, asian, stage:Stage II, alive, 2102 days 3163.9
TCGA-ED-A7PZ-01A 61 years, male, asian, stage:Stage II, alive, 6 days 3161.1
TCGA-DD-AACF-01A 68 years, male, asian, stage:Stage I, dead, 365 days 3159.3
TCGA-DD-A1EG-01A 76 years, male, white, stage:Stage I, dead, 1372 days 3102.4
TCGA-CC-A5UE-01A 48 years, male, asian, stage:Stage IIIB, dead, 272 days 2993.1
TCGA-YA-A8S7-01A 68 years, male, white, stage:Stage IIIA, dead, 412 days 2992.6
TCGA-EP-A3RK-01A 73 years, male, white, stage:Stage IIIA, alive, 363 days 2984.6
TCGA-G3-A25V-01A 68 years, male, white, stage:Stage I, alive, 860 days 2920.9
TCGA-DD-AACL-01A 66 years, female, asian, stage:Stage I, dead, 107 days 2767.7
TCGA-UB-A7ME-01A 51 years, male, asian, stage:Stage I, alive, 486 days 2750.3
TCGA-G3-AAV5-01A 67 years, male, white, stage:Stage II, alive, 354 days 2733.1
TCGA-KR-A7K2-01A 64 years, male, white, stage:Stage I, alive, 829 days 2638.4
TCGA-DD-AAEB-01A 60 years, male, asian, stage:Stage I, alive, 478 days 2583.3
TCGA-MI-A75G-01A 63 years, male, white, stage:Stage II, alive, 698 days 2484.7
TCGA-CC-A7IJ-01A 56 years, male, asian, stage:Stage II, alive, 382 days 2471.1
TCGA-G3-A25Y-01A 52 years, female, asian, stage:Stage I, dead, 452 days 2460.8
TCGA-DD-AAC9-01A 51 years, male, asian, stage:Stage I, alive, 347 days 2439.1
TCGA-DD-AAE7-01A 72 years, male, asian, stage:Stage I, alive, 644 days 2437.7
TCGA-G3-A25S-01A 64 years, male, white, stage:Stage I, dead, 416 days 2431.2
TCGA-FV-A4ZQ-01A 52 years, male, white, stage:Stage I, alive, 12 days 2325.6
TCGA-DD-AAVQ-01A 38 years, male, asian, stage:Stage I, alive, 2728 days 2324.0
TCGA-5C-AAPD-01A 61 years, male, asian, stage:Stage II, alive, 20 days 2302.6
TCGA-CC-5262-01A 67 years, male, asian, stage:Stage IIIC, dead, 103 days 2294.4
TCGA-UB-A7MA-01A 62 years, female, white, stage:Stage II, alive, 848 days 2282.3
TCGA-BW-A5NO-01A 50 years, male, black or african american, stage:Stage IIIA, alive, 20 days 2245.8
TCGA-DD-A4NN-01A 56 years, female, white, stage:Stage I, dead, 899 days 2231.2
TCGA-BC-A69I-01A 69 years, male, white, stage:Stage I, alive, 387 days 2221.7
TCGA-DD-AAE0-01A 45 years, female, asian, stage:Stage IIIA, alive, 555 days 2115.3
TCGA-2Y-A9H4-01A 68 years, male, black or african american, stage:Stage I, alive, 1452 days 2112.5
TCGA-CC-A3M9-01A 45 years, male, asian, stage:Stage IIIA, dead, 300 days 2111.2
TCGA-UB-A7MF-01A 56 years, male, white, stage:Stage IIIA, dead, 214 days 2049.7
TCGA-WQ-AB4B-01A 62 years, male, white, stage:Stage II, alive, 395 days 2029.3
TCGA-DD-A119-01A 40 years, male, asian, stage:Stage IV, dead, 223 days 1937.2
TCGA-DD-AAE4-01A 49 years, female, asian, stage:Stage I, alive, 608 days 1848.4
TCGA-ED-A5KG-01A 60 years, female, asian, stage:Stage II, alive, 854 days 1774.4
TCGA-BC-A5W4-01A 69 years, male, white, stage:Stage IIIA, dead, 547 days 1683.0
TCGA-DD-A3A3-01A 45 years, male, asian, stage:Stage I, dead, 535 days 1625.5
TCGA-K7-A6G5-01A 66 years, male, white, stage:Stage I, alive, 512 days 1576.2
TCGA-G3-A7M5-01A 76 years, male, asian, stage:Stage I, alive, 447 days 1555.0
TCGA-2Y-A9GY-01A 64 years, female, white, stage:Stage II, dead, 757 days 1546.5
TCGA-DD-AADJ-01A 70 years, female, asian, stage:Stage I, alive, 1066 days 1452.8
TCGA-FV-A2QQ-01A 80 years, male, white, stage:Stage I, alive, 729 days 1429.3
TCGA-G3-A3CJ-01A 52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days 1335.9
TCGA-G3-A25T-01A 45 years, female, white, stage:Stage IIIA, alive, 1553 days 1298.3
TCGA-DD-AACB-01A 74 years, female, asian, stage:Stage I, alive, 2324 days 1249.0
TCGA-DD-AACC-01A 61 years, male, asian, stage:Stage I, dead, 1685 days 1230.3
TCGA-CC-5259-01A 60 years, female, asian, stage:Stage IIIC, alive, 250 days 1125.3
TCGA-DD-A3A7-01A 67 years, male, stage:Stage IIIB, dead, 419 days 1064.4
TCGA-EP-A2KA-01A 52 years, female, white, stage:Stage IIIA, dead, 627 days 1034.8
TCGA-BC-A217-01A 75 years, female, white, stage:Stage II, dead, 1397 days 1031.3
TCGA-DD-AADS-01A 63 years, male, asian, stage:Stage I, alive, 474 days 986.1
TCGA-DD-A39Z-01A 43 years, female, stage:Stage II, dead, 601 days 965.9
TCGA-G3-AAV0-01A 58 years, male, asian, stage:Stage I, alive, 476 days 925.3
TCGA-CC-A7IG-01A 47 years, male, asian, stage:Stage II, dead, 299 days 922.1
TCGA-DD-A3A9-01A 64 years, female, white, stage:Stage IVB, dead, 931 days 863.7
TCGA-2Y-A9H3-01A 45 years, male, white, stage:Stage II, alive, 1516 days 832.7
TCGA-DD-AACO-01A 40 years, male, asian, stage:Stage I, alive, 1876 days 776.4
TCGA-DD-AACD-01A 48 years, male, asian, stage:Stage I, dead, 381 days 743.5
TCGA-G3-AAUZ-01A 48 years, male, stage:Stage I, alive, 480 days 743.0
TCGA-DD-AADM-01A 58 years, male, asian, stage:Stage II, dead, 12 days 706.4
TCGA-ES-A2HS-01A 80 years, male, white, stage:Stage I, dead, 688 days 693.0
TCGA-DD-AAVU-01A 46 years, male, asian, stage:Stage II, alive, 2202 days 668.8
TCGA-2Y-A9H1-01A 58 years, male, white, stage:Stage I, dead, 1229 days 662.5
TCGA-G3-AAV6-01A 53 years, female, white, stage:Stage IIIA, dead, 65 days 627.8
TCGA-CC-A123-01A 24 years, female, asian, stage:Stage IIIA, alive, 219 days 618.5
TCGA-DD-AADI-01A 43 years, female, asian, stage:Stage I, alive, 1085 days 613.6
TCGA-CC-A7II-01A 54 years, male, asian, stage:Stage IIIA, alive, 399 days 609.9
TCGA-DD-A3A1-01A 65 years, male, stage:Stage IIIA, dead, 233 days 569.3
TCGA-DD-AACG-01A 52 years, male, asian, stage:Stage II, dead, 469 days 538.6
TCGA-KR-A7K7-01A 61 years, female, white, stage:Stage II, alive, 951 days 532.5
TCGA-DD-A39Y-01A 67 years, male, asian, stage:Stage I, dead, 171 days 513.6
TCGA-FV-A4ZP-01A 78 years, male, white, stage:Stage IIIA, dead, 2486 days 508.3
TCGA-FV-A495-01A 51 years, female, white, stage:Stage II, alive, 1 days 485.9
TCGA-DD-A73G-01A 73 years, female, white, stage:Stage I, alive, 3478 days 473.7
TCGA-DD-AACI-01A 69 years, male, asian, stage:Stage II, alive, 1618 days 462.3
TCGA-DD-A39X-01A 78 years, female, white, stage:Stage I, dead, 1694 days 440.9
TCGA-DD-AADN-01A 59 years, male, asian, stage:Stage I, alive, 898 days 385.1
TCGA-ES-A2HT-01A 54 years, male, black or african american, stage:Stage I, dead, 438 days 301.0
TCGA-DD-A39V-01A 77 years, male, white, stage:Stage II, dead, 643 days 273.1
TCGA-DD-AADO-01A 55 years, male, asian, stage:Stage I, alive, 453 days 244.3
TCGA-BC-A69H-01A 64 years, male, white, stage:Stage II, alive, 444 days 190.9
TCGA-G3-A25X-01A 73 years, male, asian, stage:Stage II, alive, 1779 days 176.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

  Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples 330
Samples
Sample ID Sample type nRPX
471 Tumor N/A
351 Tumor N/A
472 Normal N/A
231 Tumor N/A
352 Normal N/A
473 Tumor N/A
111 Normal N/A
232 Normal N/A
353 Tumor N/A
474 Normal N/A
112 Tumor N/A
354 Normal N/A
113 Tumor N/A
355 Tumor N/A
114 Normal N/A
356 Normal N/A
477 Tumor N/A
357 Tumor N/A
478 Normal N/A
358 Normal N/A
911 Tumor N/A
912 Normal N/A
913 Tumor N/A
914 Normal N/A
915 Tumor N/A
916 Normal N/A
917 Tumor N/A
918 Normal N/A
481 Tumor N/A
361 Tumor N/A
482 Normal N/A
362 Normal N/A
483 Tumor N/A
363 Tumor N/A
484 Normal N/A
364 Normal N/A
123 Tumor N/A
365 Tumor N/A
124 Normal N/A
366 Normal N/A
487 Tumor N/A
125 Tumor N/A
367 Tumor N/A
488 Normal N/A
126 Normal N/A
368 Normal N/A
127 Tumor N/A
128 Normal N/A
921 Tumor N/A
922 Normal N/A
923 Tumor N/A
924 Normal N/A
925 Tumor N/A
926 Normal N/A
491 Tumor N/A
492 Normal N/A
493 Tumor N/A
131 Tumor N/A
494 Normal N/A
132 Normal N/A
375 Tumor N/A
376 Normal N/A
497 Tumor N/A
135 Tumor N/A
498 Normal N/A
136 Normal N/A
257 Tumor N/A
137 Tumor N/A
258 Normal N/A
138 Normal N/A
813 Tumor N/A
814 Normal N/A
815 Tumor N/A
816 Normal N/A
937 Tumor N/A
817 Tumor N/A
938 Normal N/A
818 Normal N/A
261 Tumor N/A
141 Tumor N/A
262 Normal N/A
383 Tumor N/A
142 Normal N/A
384 Normal N/A
385 Tumor N/A
386 Normal N/A
145 Tumor N/A
387 Tumor N/A
146 Normal N/A
267 Tumor N/A
388 Normal N/A
147 Tumor N/A
268 Normal N/A
148 Normal N/A
943 Tumor N/A
823 Tumor N/A
944 Normal N/A
824 Normal N/A
1022 Normal N/A
1021 Tumor N/A
391 Tumor N/A
271 Tumor N/A
392 Normal N/A
272 Normal N/A
393 Tumor N/A
394 Normal N/A
395 Tumor N/A
396 Normal N/A
277 Tumor N/A
1016 Normal N/A
278 Normal N/A
1015 Tumor N/A
1014 Normal N/A
951 Tumor N/A
1013 Tumor N/A
952 Normal N/A
953 Tumor N/A
954 Normal N/A
713 Tumor N/A
955 Tumor N/A
714 Normal N/A
956 Normal N/A
715 Tumor N/A
957 Tumor N/A
716 Normal N/A
958 Normal N/A
1032 Normal N/A
1031 Tumor N/A
161 Tumor N/A
162 Normal N/A
283 Tumor N/A
284 Normal N/A
285 Tumor N/A
286 Normal N/A
1028 Normal N/A
1027 Tumor N/A
1026 Normal N/A
1025 Tumor N/A
721 Tumor N/A
963 Tumor N/A
722 Normal N/A
964 Normal N/A
723 Tumor N/A
965 Tumor N/A
724 Normal N/A
966 Normal N/A
967 Tumor N/A
968 Normal N/A
727 Tumor N/A
728 Normal N/A
1044 Normal N/A
1043 Tumor N/A
1042 Normal N/A
1041 Tumor N/A
171 Tumor N/A
172 Normal N/A
297 Tumor N/A
298 Normal N/A
851 Tumor N/A
852 Normal N/A
975 Tumor N/A
976 Normal N/A
977 Tumor N/A
615 Tumor N/A
857 Tumor N/A
978 Normal N/A
616 Normal N/A
737 Tumor N/A
858 Normal N/A
617 Tumor N/A
738 Normal N/A
618 Normal N/A
185 Tumor N/A
186 Normal N/A
187 Tumor N/A
188 Normal N/A
981 Tumor N/A
861 Tumor N/A
982 Normal N/A
741 Tumor N/A
862 Normal N/A
983 Tumor N/A
742 Normal N/A
863 Tumor N/A
984 Normal N/A
1046 Normal N/A
743 Tumor N/A
864 Normal N/A
1045 Tumor N/A
744 Normal N/A
865 Tumor N/A
745 Tumor N/A
866 Normal N/A
746 Normal N/A
867 Tumor N/A
868 Normal N/A
627 Tumor N/A
628 Normal N/A
191 Tumor N/A
192 Normal N/A
195 Tumor N/A
196 Normal N/A
873 Tumor N/A
874 Normal N/A
513 Tumor N/A
755 Tumor N/A
514 Normal N/A
635 Tumor N/A
756 Normal N/A
877 Tumor N/A
515 Tumor N/A
636 Normal N/A
878 Normal N/A
516 Normal N/A
517 Tumor N/A
518 Normal N/A
881 Tumor N/A
882 Normal N/A
641 Tumor N/A
883 Tumor N/A
642 Normal N/A
884 Normal N/A
523 Tumor N/A
524 Normal N/A
525 Tumor N/A
526 Normal N/A
647 Tumor N/A
527 Tumor N/A
648 Normal N/A
528 Normal N/A
411 Tumor N/A
412 Normal N/A
533 Tumor N/A
413 Tumor N/A
534 Normal N/A
414 Normal N/A
535 Tumor N/A
777 Tumor N/A
415 Tumor N/A
536 Normal N/A
778 Normal N/A
416 Normal N/A
537 Tumor N/A
538 Normal N/A
661 Tumor N/A
662 Normal N/A
421 Tumor N/A
663 Tumor N/A
422 Normal N/A
664 Normal N/A
785 Tumor N/A
423 Tumor N/A
665 Tumor N/A
786 Normal N/A
424 Normal N/A
545 Tumor N/A
666 Normal N/A
425 Tumor N/A
546 Normal N/A
426 Normal N/A
427 Tumor N/A
428 Normal N/A
671 Tumor N/A
672 Normal N/A
431 Tumor N/A
311 Tumor N/A
432 Normal N/A
553 Tumor N/A
312 Normal N/A
433 Tumor N/A
554 Normal N/A
313 Tumor N/A
434 Normal N/A
314 Normal N/A
435 Tumor N/A
436 Normal N/A
557 Tumor N/A
558 Normal N/A
563 Tumor N/A
443 Tumor N/A
564 Normal N/A
685 Tumor N/A
444 Normal N/A
686 Normal N/A
445 Tumor N/A
446 Normal N/A
567 Tumor N/A
447 Tumor N/A
568 Normal N/A
327 Tumor N/A
448 Normal N/A
328 Normal N/A
571 Tumor N/A
451 Tumor N/A
572 Normal N/A
331 Tumor N/A
452 Normal N/A
573 Tumor N/A
211 Tumor N/A
332 Normal N/A
574 Normal N/A
695 Tumor N/A
212 Normal N/A
696 Normal N/A
213 Tumor N/A
455 Tumor N/A
697 Tumor N/A
214 Normal N/A
456 Normal N/A
698 Normal N/A
217 Tumor N/A
218 Normal N/A
461 Tumor N/A
341 Tumor N/A
462 Normal N/A
221 Tumor N/A
342 Normal N/A
463 Tumor N/A
222 Normal N/A
343 Tumor N/A
464 Normal N/A
223 Tumor N/A
344 Normal N/A
465 Tumor N/A
224 Normal N/A
466 Normal N/A
467 Tumor N/A
468 Normal N/A
227 Tumor N/A
228 Normal N/A
Show allShow less
LIVER CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Pending cancer tissue analysis

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org