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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-ND4L is not prognostic in Testicular Germ Cell Tumor (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
7754.0
Number of samples
133
Samples
Sample
Description
pTPM
TCGA-XE-AAOL-01A
38 years, male, black or african american, stage:Stage I, alive, 13 days
63628.2
TCGA-ZM-AA05-01A
36 years, male, white, stage:Stage IIC, alive, 1126 days
47303.0
TCGA-ZM-AA06-01A
45 years, male, white, stage:Stage IB, alive, 1498 days
41115.0
TCGA-ZM-AA0E-01A
39 years, male, white, stage:Stage IA, alive, 811 days
34004.3
TCGA-ZM-AA0N-01A
44 years, male, white, stage:Stage IB, alive, 634 days
32501.5
TCGA-XE-AAO6-01A
47 years, male, white, stage:Stage IA, alive, 240 days
26048.9
TCGA-ZM-AA0B-01A
32 years, male, white, stage:Stage IA, alive, 838 days
25752.4
TCGA-ZM-AA0F-01A
35 years, male, white, stage:Stage IA, alive, 681 days
25342.5
TCGA-ZM-AA0H-01A
50 years, male, white, stage:Stage IS, alive, 1736 days
19543.9
TCGA-S6-A8JX-01A
27 years, male, white, stage:Stage IB, alive, 552 days
14137.1
TCGA-2G-AAG6-01A
24 years, male, white, stage:Stage IS, alive, 2231 days
14036.0
TCGA-XE-AAO4-01A
40 years, male, white, stage:Stage IA, alive, 367 days
13628.5
TCGA-YU-A90P-01A
25 years, male, white, stage:Stage IA, alive, 2069 days
11345.7
TCGA-WZ-A8D5-01A
38 years, male, white, stage:'--, alive, 774 days
11060.7
TCGA-ZM-AA0D-01A
34 years, male, white, stage:Stage IA, alive, 848 days
10896.4
TCGA-2G-AAFE-01A
37 years, male, white, stage:Stage IIA, alive, 4702 days
10895.6
TCGA-YU-A94I-01A
66 years, male, stage:Stage IA, alive, 536 days
10693.1
TCGA-YU-A90Y-01A
23 years, male, black or african american, stage:Stage IIIC, dead, 17 days
10678.1
TCGA-2G-AAHG-01A
25 years, male, white, stage:Stage I, alive, 1819 days
10307.6
TCGA-XE-A8H1-01A
24 years, male, white, stage:Stage IS, alive, 209 days
10200.9
TCGA-WZ-A7V4-01A
28 years, male, white, stage:Stage I, alive, 894 days
10179.8
TCGA-4K-AA1I-01A
26 years, male, white, stage:Stage IA, alive, 3 days
10013.2
TCGA-XE-A8H5-01A
29 years, male, stage:Stage IS, alive, 1217 days
9734.2
TCGA-2G-AAG7-01A
33 years, male, white, stage:Stage IS, alive, 2475 days
9730.6
TCGA-SN-A84W-01A
30 years, male, white, stage:Stage IS, alive, 293 days
9470.9
TCGA-2G-AAGG-01A
20 years, male, white, stage:Stage IIIC, alive, 2611 days
9374.7
TCGA-YU-A90S-01A
26 years, male, white, stage:Stage IA, alive, 971 days
9017.8
TCGA-2G-AAGY-01A
28 years, male, white, stage:Stage IS, alive, 5329 days
8869.9
TCGA-2G-AAFJ-01A
23 years, male, asian, stage:'--, alive, 792 days
8754.8
TCGA-S6-A8JY-01A
27 years, male, white, stage:Stage IS, alive, 278 days
8715.7
TCGA-XE-AAOC-01A
31 years, male, white, stage:Stage IA, alive, 270 days
8600.8
TCGA-YU-A90W-01A
45 years, male, white, stage:Stage IA, alive, 1113 days
8323.1
TCGA-S6-A8JW-01A
37 years, male, white, stage:Stage IS, alive, 698 days
8186.2
TCGA-YU-A90Q-01A
21 years, male, stage:Stage IB, alive, 1964 days
8148.9
TCGA-2G-AAF8-01A
33 years, male, white, stage:Stage IA, alive, 3911 days
8136.9
TCGA-2G-AAG5-01A
36 years, male, white, stage:Stage IS, alive, 2299 days
8117.8
TCGA-XE-A8H4-01A
23 years, male, white, stage:Stage IA, alive, 559 days
8024.8
TCGA-2G-AAG3-01A
53 years, male, white, stage:Stage IS, alive, 1593 days
7994.0
TCGA-2G-AAFY-01A
24 years, male, white, stage:Stage IIA, alive, 1099 days
7916.2
TCGA-YU-A94D-01A
28 years, male, stage:Stage IIIB, alive, 2167 days
7827.6
TCGA-2G-AAFH-01A
38 years, male, white, stage:Stage IIB, alive, 1375 days
7720.5
TCGA-XE-AANJ-01A
39 years, male, white, stage:Stage IS, alive, 2007 days
7686.7
TCGA-2G-AAGV-01A
23 years, male, white, stage:'--, alive, 4527 days
7678.4
TCGA-2G-AAKM-01A
14 years, male, white, stage:Stage II, dead, 6972 days
7517.0
TCGA-XE-AAOJ-01A
24 years, male, white, stage:Stage IS, alive, 1550 days
7491.8
TCGA-2G-AAHA-01A
48 years, male, white, stage:Stage IB, alive, 3349 days
7457.1
TCGA-VF-A8AB-01A
31 years, male, black or african american, stage:Stage IA, alive, 760 days
7322.8
TCGA-2G-AAH2-01A
20 years, male, white, stage:Stage IS, alive, 6060 days
7322.3
TCGA-2G-AAKD-01A
18 years, male, white, stage:Stage III, alive, 6340 days
7277.7
TCGA-2G-AAGI-01A
33 years, male, white, stage:Stage IS, alive, 3137 days
7210.6
TCGA-W4-A7U4-01A
23 years, male, white, stage:'--, alive, 738 days
7199.9
TCGA-2X-A9D6-01A
42 years, male, white, stage:Stage I, alive, 607 days
7040.4
TCGA-2X-A9D5-01A
49 years, male, white, stage:Stage I, alive, 435 days
6982.0
TCGA-2G-AAKL-01A
26 years, male, white, stage:Stage II, alive, 7023 days
6836.1
TCGA-VF-A8A9-01A
31 years, male, white, stage:Stage IA, alive, 1119 days
6765.9
TCGA-2G-AAH0-01A
30 years, male, white, stage:Stage IS, alive, 5477 days
6748.7
TCGA-2G-AAGS-01A
39 years, male, white, stage:Stage IIIB, alive, 4816 days
6697.7
TCGA-2G-AAG0-01A
23 years, male, white, stage:Stage IS, alive, 1529 days
6637.9
TCGA-2G-AAF4-01A
30 years, male, white, stage:Stage I, alive, 2315 days
6607.5
TCGA-2G-AAG9-01A
25 years, male, white, stage:Stage IIIB, alive, 2234 days
6587.0
TCGA-2G-AAHC-01A
33 years, male, white, stage:Stage IS, alive, 5539 days
6432.7
TCGA-SN-A6IS-01A
26 years, male, white, stage:Stage IS, alive, 496 days
6334.9
TCGA-2G-AAGP-01A
33 years, male, white, stage:Stage IIA, alive, 4018 days
6257.6
TCGA-2G-AAGE-01A
21 years, male, white, stage:Stage IS, alive, 2478 days
6172.6
TCGA-W4-A7U2-01A
26 years, male, white, stage:'--, alive, 1263 days
6008.3
TCGA-2G-AAFZ-01A
32 years, male, white, stage:Stage III, alive, 1353 days
5985.8
TCGA-2G-AAH8-01A
45 years, male, white, stage:Stage IIIC, alive, 2248 days
5968.9
TCGA-XY-A89B-01A
35 years, male, white, stage:Stage IA, alive, 471 days
5849.3
TCGA-2G-AAHT-01A
32 years, male, white, stage:Stage IS, alive, 542 days
5705.1
TCGA-XE-AAOF-01A
50 years, male, asian, stage:Stage IA, alive, 1268 days
5665.3
TCGA-4K-AA1H-01A
26 years, male, white, stage:Stage IA, alive, 518 days
5664.8
TCGA-YU-AA61-01A
29 years, male, white, stage:Stage IS, alive, 864 days
5652.6
TCGA-WZ-A7V5-01A
27 years, male, white, stage:Stage I, alive, 1061 days
5536.8
TCGA-SB-A76C-01A
38 years, male, white, stage:'--, alive, 42 days
5320.5
TCGA-YU-AA4L-01A
27 years, male, black or african american, stage:Stage IIIC, alive, 1573 days
5255.6
TCGA-2G-AAGC-01A
28 years, male, white, stage:Stage IS, alive, 2585 days
5204.4
TCGA-2G-AAFI-01A
41 years, male, white, stage:Stage IB, alive, 675 days
5157.2
TCGA-YU-A912-01A
34 years, male, black or african american, stage:Stage IIIC, alive, 866 days
5110.6
TCGA-2G-AAFG-01A
30 years, male, white, stage:Stage IS, alive, 6183 days
5040.3
TCGA-XE-AAOD-01A
39 years, male, white, stage:Stage IB, alive, 2058 days
5022.0
TCGA-2G-AAKH-01A
19 years, male, white, stage:Stage II, alive, 6862 days
5000.1
TCGA-2G-AAGO-01A
41 years, male, white, stage:Stage IS, alive, 4026 days
4977.3
TCGA-XE-AANV-01A
52 years, male, stage:Stage IB, alive, 1701 days
4793.3
TCGA-SO-A8JP-01A
29 years, male, white, stage:Stage I, alive, 540 days
4714.1
TCGA-XE-AANI-01A
37 years, male, white, stage:Stage IS, alive, 1041 days
4602.9
TCGA-XE-AAO3-01A
33 years, male, asian, stage:Stage I, alive, 2857 days
4529.8
TCGA-2G-AAGM-01A
51 years, male, white, stage:Stage IS, alive, 3891 days
4504.6
TCGA-4K-AA1G-01A
34 years, male, white, stage:Stage IS, alive, 436 days
4478.7
TCGA-2G-AAH3-01A
20 years, male, white, stage:Stage I, alive, 1822 days
4436.3
TCGA-WZ-A7V3-01A
20 years, male, white, stage:Stage I, alive, 753 days
4333.1
TCGA-2G-AAEX-01A
38 years, male, white, stage:Stage IS, alive, 1259 days
4177.7
TCGA-SB-A6J6-01A
22 years, male, white, stage:Stage IA, alive, 413 days
4163.8
TCGA-XY-A8S2-01A
67 years, male, white, stage:Stage I, alive, 672 days
4134.1
TCGA-SN-A84Y-01A
18 years, male, white, stage:Stage IS, alive, 524 days
3961.0
TCGA-2G-AAEW-01A
31 years, male, white, stage:Stage IS, dead, 618 days
3860.6
TCGA-2G-AAGX-01A
22 years, male, white, stage:Stage IA, alive, 5514 days
3816.4
TCGA-2G-AAGF-01A
28 years, male, white, stage:Stage IS, alive, 2734 days
3677.3
TCGA-2G-AAGA-01A
38 years, male, white, stage:Stage IIA, alive, 2439 days
3463.5
TCGA-VF-A8AA-01A
51 years, male, white, stage:Stage I, alive, 1146 days
3447.9
TCGA-VF-A8AD-01A
36 years, male, white, stage:Stage IB, alive, 1006 days
3439.0
TCGA-2G-AALP-01A
43 years, male, white, stage:Stage IIIB, alive, 2645 days
3425.3
TCGA-4K-AAAL-01A
31 years, male, white, stage:Stage IS, alive, 483 days
3343.2
TCGA-2G-AAGN-01A
41 years, male, white, stage:Stage IIIB, alive, 3656 days
3328.0
TCGA-VF-A8A8-01A
18 years, male, white, stage:Stage IA, alive, 1131 days
3282.7
TCGA-XE-A9SE-01A
35 years, male, white, stage:Stage IA, alive, 708 days
3260.8
TCGA-2G-AAKG-01A
22 years, male, white, stage:Stage I, alive, 6598 days
3212.6
TCGA-2G-AAF1-01A
28 years, male, asian, stage:Stage IS, alive, 1403 days
3193.6
TCGA-2G-AAGK-01A
20 years, male, white, stage:Stage IS, alive, 3621 days
3176.8
TCGA-2G-AAFV-01A
31 years, male, white, stage:Stage IS, alive, 1389 days
3134.9
TCGA-2G-AAF6-01A
28 years, male, white, stage:Stage IS, alive, 3491 days
3105.9
TCGA-W4-A7U3-01A
26 years, male, white, stage:'--, alive, 149 days
3059.8
TCGA-X3-A8G4-01A
33 years, male, white, stage:Stage IS, alive, 856 days
2973.0
TCGA-XY-A9T9-01A
37 years, male, white, stage:Stage IS, alive, 281 days
2857.9
TCGA-XE-AAOB-01A
27 years, male, white, stage:Stage IS, dead, 513 days
2719.6
TCGA-VF-A8AE-01A
39 years, male, white, stage:Stage IA, alive, 727 days
2387.6
TCGA-2G-AAL7-01A
32 years, male, white, stage:Stage IS, alive, 3991 days
2273.4
TCGA-2G-AAGJ-01A
28 years, male, black or african american, stage:Stage IA, alive, 2938 days
2236.7
TCGA-2G-AAGZ-01A
27 years, male, white, stage:Stage IIIA, alive, 5233 days
2123.7
TCGA-2G-AAGT-01A
30 years, male, white, stage:Stage IS, alive, 4406 days
2105.0
TCGA-2G-AAH4-01A
34 years, male, white, stage:Stage II, alive, 6210 days
1812.6
TCGA-XE-AANR-01A
23 years, male, white, stage:Stage I, alive, 14 days
1761.6
TCGA-2G-AAG8-01A
21 years, male, white, stage:Stage IB, alive, 2289 days
1730.7
TCGA-VF-A8AC-01A
29 years, male, white, stage:Stage IA, alive, 1083 days
1602.4
TCGA-2G-AAGW-01A
38 years, male, white, stage:Stage IS, alive, 4899 days
1486.1
TCGA-2G-AAL5-01A
31 years, male, white, stage:Stage I, alive, 7437 days
1394.8
TCGA-2G-AAFO-01A
33 years, male, white, stage:Stage IIA, alive, 685 days
1189.8
TCGA-2G-AAHN-01A
32 years, male, white, stage:Stage I, alive, 6445 days
1128.7
TCGA-2G-AAFL-01A
35 years, male, white, stage:Stage IB, alive, 750 days
1065.8
TCGA-2G-AAFN-01A
26 years, male, white, stage:Stage IIIB, alive, 773 days
987.7
TCGA-2G-AAHP-01A
31 years, male, white, stage:Stage IS, alive, 5667 days
981.9
TCGA-SN-A84X-01A
21 years, male, white, stage:Stage IS, alive, 312 days
784.9
TCGA-2G-AAHL-01A
26 years, male, white, stage:Stage I, alive, 7081 days
732.6
TCGA-2G-AAFM-01A
31 years, male, white, stage:Stage IIA, alive, 503 days
528.6
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TESTIS CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
The Human Protein Atlas project is funded
