MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.0 nTPM
HPA Brain:57.1 nTPM
GTEx:83.0 nTPM
FANTOM5:96.0 Scaled Tags Per Million
Mouse:64.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.7
2586 Male, age 75, left hemisphere 47.4
2828 Female, age 72, unknown 38.6
2666 Male, age 74, left hemisphere 36.4
1870 Female, age 42, unknown 36.1
1833 Male, age 53, unknown 34.8
1827 Male, age 72, unknown 34.6
2219 Male, age 76, both hemispheres 34.5
2411 Female, age 72, unknown 31.5
1830 Male, age 51, unknown 31.4
2019 Male, age 18, unknown 21.6
Dorsal raphe nucleus
nTPM: 52.3
2047 Male, age 72, unknown 68.0
2016 Female, age 72, unknown 54.7
2298 Female, age 72, unknown 52.9
1828 Male, age 53, unknown 46.8
2750 Male, age 76, both hemispheres 39.2
Inferior colliculus
nTPM: 43.7
2849 Male, age 72, unknown 51.8
1890 Male, age 53, unknown 45.1
1848 Female, age 42, unknown 41.0
2097 Female, age 72, unknown 36.8
Median raphe nucleus
nTPM: 46.0
2220 Male, age 76, midline 46.0
Periaquaductal grey, anterior
nTPM: 54.5
1947 Male, age 18, unknown 69.4
1795 Male, age 51, unknown 58.5
2502 Female, age 75, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 54.2
1840 Male, age 53, unknown 66.4
2850 Male, age 76, both hemispheres 66.3
2464 Female, age 72, unknown 43.3
1831 Male, age 72, unknown 41.0
Periaquaductal grey, lateral
nTPM: 57.1
2140 Male, age 76, both hemispheres 62.2
2053 Male, age 18, unknown 57.8
2272 Male, age 74, both hemispheres 51.2
Pretectal area
nTPM: 42.4
2273 Male, age 74, both hemispheres 59.6
2825 Male, age 18, unknown 57.3
2224 Female, age 72, unknown 55.1
2667 Female, age 75, unknown 52.8
2407 Male, age 75, both hemispheres 48.1
2316 Male, age 76, right hemisphere 37.5
1944 Female, age 72, unknown 35.4
1816 Male, age 51, unknown 33.6
1815 Male, age 53, unknown 32.0
1817 Female, age 42, unknown 31.0
2007 Male, age 72, unknown 23.5
Red nucleus
nTPM: 34.1
2725 Female, age 75, unknown 42.3
2227 Male, age 72, unknown 37.9
2769 Male, age 72, unknown 37.7
2503 Female, age 72, unknown 36.9
2823 Male, age 76, right hemisphere 36.0
1865 Male, age 51, unknown 34.6
1954 Female, age 42, unknown 34.5
2584 Male, age 75, left hemisphere 33.7
1821 Female, age 72, unknown 33.3
1904 Male, age 53, unknown 33.0
2588 Male, age 74, left hemisphere 29.4
2785 Male, age 18, unknown 19.7
Substantia nigra
nTPM: 36.8
2699 Male, age 18, unknown 55.4
2665 Male, age 74, both hemispheres 43.7
1851 Male, age 51, unknown 37.9
2583 Male, age 75, right hemisphere 37.5
1916 Female, age 42, unknown 36.0
2241 Male, age 72, unknown 35.0
1889 Female, age 72, unknown 32.6
2590 Female, age 75, unknown 31.2
1941 Male, age 53, unknown 30.0
2409 Female, age 72, unknown 28.9
Superior colliculus
nTPM: 37.5
2664 Male, age 75, both hemispheres 52.8
1995 Male, age 72, unknown 42.2
2668 Female, age 75, unknown 38.8
1839 Male, age 51, unknown 38.6
1796 Male, age 53, unknown 36.0
2587 Male, age 74, left hemisphere 34.2
2261 Male, age 18, unknown 33.8
1913 Female, age 42, unknown 33.3
2087 Female, age 72, unknown 32.7
1895 Male, age 76, right hemisphere 32.3
Ventral tegmental area
nTPM: 41.7
2021 Male, age 53, unknown 54.2
1915 Female, age 42, unknown 44.3
1942 Male, age 51, unknown 43.3
2223 Female, age 72, unknown 39.4
2218 Male, age 76, both hemispheres 35.1
2410 Female, age 72, unknown 34.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 83.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.0
Samples: 139

Max nTPM: 181.5
Min nTPM: 21.2
Std nTPM: 28.7
Median nTPM: 81.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 181.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 168.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 150.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 147.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 144.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 141.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 139.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 138.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 135.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 132.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 130.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.0
FF:10158-103A5 76 years, female 96.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 71.8
Min nTPM: 57.8
Sample A Male 62.2
Sample B Male 57.8
Sample C Female 64.8
Sample D Female 71.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71656927 Antisense, RP_050927_04_E09, Mouse strain C57BL/6J (56 days, male) 0.2

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