MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:150.1 nTPM
HPA Brain:51.7 nTPM
GTEx:150.1 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:181.9 nTPM
Mouse:403.1 nTPM
Allen mouse:21.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
2219 Male, age 76, both hemispheres 44.6
1833 Male, age 53, unknown 43.9
1827 Male, age 72, unknown 42.8
2019 Male, age 18, unknown 42.5
2828 Female, age 72, unknown 42.3
2586 Male, age 75, left hemisphere 41.9
1870 Female, age 42, unknown 37.5
2411 Female, age 72, unknown 37.5
2666 Male, age 74, left hemisphere 34.7
1830 Male, age 51, unknown 30.8
Dorsal raphe nucleus
nTPM: 39.7
2298 Female, age 72, unknown 57.3
1828 Male, age 53, unknown 43.7
2750 Male, age 76, both hemispheres 38.3
2047 Male, age 72, unknown 30.8
2016 Female, age 72, unknown 28.6
Inferior colliculus
nTPM: 39.0
2097 Female, age 72, unknown 40.9
2849 Male, age 72, unknown 39.2
1848 Female, age 42, unknown 38.1
1890 Male, age 53, unknown 37.8
Median raphe nucleus
nTPM: 42.1
2220 Male, age 76, midline 42.1
Periaquaductal grey, anterior
nTPM: 43.3
1795 Male, age 51, unknown 51.4
2502 Female, age 75, unknown 43.4
1947 Male, age 18, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 35.9
2464 Female, age 72, unknown 48.8
2850 Male, age 76, both hemispheres 38.6
1831 Male, age 72, unknown 33.0
1840 Male, age 53, unknown 23.3
Periaquaductal grey, lateral
nTPM: 29.7
2272 Male, age 74, both hemispheres 33.4
2053 Male, age 18, unknown 29.1
2140 Male, age 76, both hemispheres 26.8
Pretectal area
nTPM: 51.7
1816 Male, age 51, unknown 84.9
1815 Male, age 53, unknown 68.3
1817 Female, age 42, unknown 67.5
2007 Male, age 72, unknown 64.4
1944 Female, age 72, unknown 57.5
2667 Female, age 75, unknown 52.1
2224 Female, age 72, unknown 50.8
2825 Male, age 18, unknown 45.4
2407 Male, age 75, both hemispheres 31.3
2316 Male, age 76, right hemisphere 25.5
2273 Male, age 74, both hemispheres 20.5
Red nucleus
nTPM: 35.3
1821 Female, age 72, unknown 55.7
2725 Female, age 75, unknown 44.0
2785 Male, age 18, unknown 41.0
1865 Male, age 51, unknown 39.9
2503 Female, age 72, unknown 37.2
1954 Female, age 42, unknown 34.6
2823 Male, age 76, right hemisphere 34.0
2227 Male, age 72, unknown 30.1
2588 Male, age 74, left hemisphere 29.7
1904 Male, age 53, unknown 29.4
2769 Male, age 72, unknown 26.7
2584 Male, age 75, left hemisphere 21.3
Substantia nigra
nTPM: 48.8
2241 Male, age 72, unknown 86.2
1941 Male, age 53, unknown 60.4
1889 Female, age 72, unknown 48.5
2665 Male, age 74, both hemispheres 47.3
1916 Female, age 42, unknown 45.3
2583 Male, age 75, right hemisphere 43.4
2699 Male, age 18, unknown 42.0
1851 Male, age 51, unknown 40.7
2409 Female, age 72, unknown 40.5
2590 Female, age 75, unknown 33.9
Superior colliculus
nTPM: 41.4
2587 Male, age 74, left hemisphere 57.4
2087 Female, age 72, unknown 55.2
2261 Male, age 18, unknown 46.3
1796 Male, age 53, unknown 42.6
2664 Male, age 75, both hemispheres 40.3
2668 Female, age 75, unknown 39.7
1895 Male, age 76, right hemisphere 37.0
1913 Female, age 42, unknown 35.6
1839 Male, age 51, unknown 31.5
1995 Male, age 72, unknown 28.6
Ventral tegmental area
nTPM: 33.1
2218 Male, age 76, both hemispheres 41.9
2223 Female, age 72, unknown 37.2
1915 Female, age 42, unknown 36.9
2410 Female, age 72, unknown 33.9
1942 Male, age 51, unknown 24.8
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 150.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 150.1
Samples: 139

Max nTPM: 606.6
Min nTPM: 51.7
Std nTPM: 70.8
Median nTPM: 135.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 606.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 418.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 329.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 301.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 299.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 293.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 286.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 266.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 258.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 241.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 238.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.4
FF:10158-103A5 76 years, female 75.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 181.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.0
Samples: 4

Max nTPM: 193.0
Min nTPM: 68.9
Sample A Female 192.5
Sample B Female 97.4
Sample C Male 193.0
Sample D Male 68.9
Midbrain
nTPM: 170.3
Samples: 4

Max nTPM: 248.9
Min nTPM: 78.3
Sample A Female 78.3
Sample B Female 130.9
Sample C Male 248.9
Sample D Male 222.9
Periaqueductal gray
nTPM: 124.3
Samples: 3

Max nTPM: 155.8
Min nTPM: 106.5
Sample B Female 110.6
Sample C Male 155.8
Sample D Male 106.5
Superior colliculi
nTPM: 181.9
Samples: 4

Max nTPM: 227.4
Min nTPM: 103.5
Sample A Female 210.8
Sample B Female 103.5
Sample C Male 227.4
Sample D Male 186.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 403.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 403.1
Samples: 4

Max nTPM: 406.5
Min nTPM: 398.4
Sample A Male 398.4
Sample B Male 401.1
Sample C Female 406.4
Sample D Female 406.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
583575 Antisense, RP_040831_02_G07, Mouse strain C57BL/6J (56 days, male) 21.4

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