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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:160.1 nTPM
HPA Brain:92.8 nTPM
GTEx:160.1 nTPM
FANTOM5:86.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 77.9
1981 Female, age 72, midline 93.7
2565 Male, age 75, midline 87.2
2048 Male, age 55, midline 70.7
2194 Female, age 79, both hemispheres 69.9
2816 Male, age 47, midline 68.0
Cervical spinal cord, dorsal horn
nTPM: 92.8
2173 Female, age 72, unknown 107.8
2069 Male, age 47, both hemispheres 103.0
2296 Male, age 66, both hemispheres 99.4
1877 Male, age 55, unknown 87.8
2721 Male, age 90, both hemispheres 80.7
2297 Male, age 75, both hemispheres 78.0
Cervical spinal cord, ventral horn
nTPM: 85.9
2098 Female, age 72, unknown 109.1
2480 Male, age 75, both hemispheres 105.9
2809 Male, age 90, both hemispheres 89.4
2068 Male, age 55, unknown 75.7
2295 Male, age 66, both hemispheres 73.2
2820 Female, age 79, both hemispheres 62.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 160.1
Samples: 159

Max nTPM: 256.8
Min nTPM: 62.1
Std nTPM: 32.3
Median nTPM: 155.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 256.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 248.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 242.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 240.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 238.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 236.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 227.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 221.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 220.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 218.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 215.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 213.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 212.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 211.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 207.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 205.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 202.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 200.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 199.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 197.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 197.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 195.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 194.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 194.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 193.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 192.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 192.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 191.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 191.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 191.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 190.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 190.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 186.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 186.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 186.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 183.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 182.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 182.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 181.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 180.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 179.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 179.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 175.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 173.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 173.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 172.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 172.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 170.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 169.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 167.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 166.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 166.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 166.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 166.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 165.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 164.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 164.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 162.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 162.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 162.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 162.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 161.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 161.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 161.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 160.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 160.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 160.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 160.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 159.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 159.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 158.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 157.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 157.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 157.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 156.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 156.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 156.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 155.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 155.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 154.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 154.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 154.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 154.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 153.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 153.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 153.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 152.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 152.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 151.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 151.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 150.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 149.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 149.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 149.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 148.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 148.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 147.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 146.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 146.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 146.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 146.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 146.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 145.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 144.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 144.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 143.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 143.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 143.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 142.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 141.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 140.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 140.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 139.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 139.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 139.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 139.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 138.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 138.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 137.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 137.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 136.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 134.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 133.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 133.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 133.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 133.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 133.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 132.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 132.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 132.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 132.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 130.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 129.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 128.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 128.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 127.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 124.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 120.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 120.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 118.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 118.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 117.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 116.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 115.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 114.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 113.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 112.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 107.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 103.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 100.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 62.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 86.6
FF:10181-103D1 60 years, female 91.0
FF:10159-103A6 76 years, female 82.3

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