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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:387.1 nTPM
HPA Brain:190.3 nTPM
GTEx:387.1 nTPM
FANTOM5:364.8 Scaled Tags Per Million
Pig:176.9 nTPM
Mouse:418.3 nTPM
Allen mouse:10.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.3
Sample id Sample description nTPM
Amygdala
nTPM: 190.3
2695 Female, age 67, right hemisphere 201.6
2814 Male, age 76, right hemisphere 200.9
1987 Female, age 91, left hemisphere 189.3
2514 Male, age 75, right hemisphere 189.0
2517 Female, age 94, left hemisphere 170.7
Basal amygdala
nTPM: 178.2
2609 Male, age 75, right hemisphere 223.8
2243 Female, age 91, right hemisphere 185.0
2685 Female, age 94, left hemisphere 174.7
2110 Male, age 80, left hemisphere 173.3
1955 Male, age 76, both hemispheres 171.7
2827 Female, age 67, right hemisphere 140.6
Central amygdala
nTPM: 184.7
2826 Female, age 94, left hemisphere 226.5
2701 Female, age 91, right hemisphere 186.4
2515 Male, age 75, right hemisphere 175.7
1905 Male, age 76, both hemispheres 172.8
2239 Male, age 80, left hemisphere 162.2
Corticomedial amygdala
nTPM: 175.4
2829 Male, age 80, left hemisphere 204.3
2428 Male, age 75, right hemisphere 201.3
2242 Female, age 91, right hemisphere 186.5
2240 Male, age 76, both hemispheres 170.8
2429 Female, age 94, left hemisphere 161.8
2535 Female, age 67, right hemisphere 127.9
Lateral amygdala
nTPM: 162.5
2534 Female, age 94, left hemisphere 195.1
2516 Male, age 75, right hemisphere 187.0
1883 Male, age 76, both hemispheres 168.7
2256 Male, age 80, left hemisphere 146.3
2255 Female, age 91, right hemisphere 139.1
2830 Female, age 67, right hemisphere 138.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 387.1
Samples: 152

Max nTPM: 821.3
Min nTPM: 212.6
Std nTPM: 93.7
Median nTPM: 373.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 821.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 717.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 672.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 654.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 648.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 582.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 571.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 549.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 539.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 510.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 509.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 507.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 500.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 497.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 497.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 492.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 492.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 491.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 489.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 476.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 476.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 475.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 470.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 469.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 461.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 459.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 459.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 458.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 453.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 448.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 441.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 437.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 437.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 436.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 435.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 434.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 432.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 429.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 428.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 426.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 420.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 420.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 419.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 416.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 416.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 413.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 412.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 410.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 408.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 408.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 407.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 406.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 406.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 404.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 403.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 402.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 401.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 401.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 401.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 400.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 399.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 395.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 394.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 393.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 393.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 391.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 390.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 389.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 388.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 385.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 383.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 380.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 380.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 379.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 375.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 374.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 371.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 371.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 369.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 368.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 368.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 363.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 360.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 360.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 360.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 359.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 359.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 358.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 356.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 354.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 353.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 353.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 353.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 352.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 352.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 351.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 351.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 349.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 347.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 347.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 347.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 344.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 343.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 342.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 339.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 339.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 337.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 336.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 334.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 334.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 334.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 333.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 332.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 330.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 329.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 329.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 329.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 325.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 324.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 324.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 324.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 319.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 318.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 317.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 312.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 307.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 304.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 303.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 303.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 297.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 293.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 292.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 291.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 287.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 286.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 286.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 285.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 285.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 281.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 281.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 281.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 274.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 273.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 270.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 269.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 263.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 246.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 243.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 230.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 218.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 215.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 212.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

364.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 364.8
FF:10151-102I7 76 years, female 364.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.9
Pig sample Sample description nTPM
Amygdala
nTPM: 176.9
Samples: 4

Max nTPM: 250.3
Min nTPM: 138.4
Sample A Female 250.3
Sample B Female 151.8
Sample C Male 138.4
Sample D Male 166.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 418.3
Samples: 4

Max nTPM: 438.0
Min nTPM: 396.9
Sample A Male 433.4
Sample B Male 396.9
Sample C Female 438.0
Sample D Female 405.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.9
75934529 Antisense, RP_060530_01_E05, Mouse strain C57BL/6J (56 days, male) 14.8
68499398 Antisense, RP_050118_01_E02, Mouse strain C57BL/6J (56 days, male) 7.0

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