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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:345.7 nTPM
FANTOM5:387.7 Scaled Tags Per Million
Pig:213.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044708
Glial cells Not detected
Neuronal cells High

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

345.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 345.7
Samples: 246

Max nTPM: 610.4
Min nTPM: 173.5
Std nTPM: 72.4
Median nTPM: 340.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 610.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 579.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 557.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 541.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 537.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 529.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 524.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 505.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 505.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 503.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 502.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 486.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 480.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 478.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 474.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 469.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 463.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 463.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 461.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 458.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 450.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 448.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 447.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 446.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 444.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 444.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 441.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 438.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 437.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 434.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 433.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 419.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 418.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 418.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 418.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 414.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 414.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 410.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 408.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 405.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 405.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 405.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 405.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 402.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 401.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 399.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 398.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 398.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 398.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 398.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 397.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 397.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 397.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 395.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 395.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 395.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 391.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 389.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 388.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 388.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 388.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 388.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 386.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 384.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 378.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 378.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 376.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 375.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 375.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 373.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 373.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 372.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 371.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 371.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 370.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 370.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 369.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 368.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 367.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 367.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 367.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 364.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 364.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 361.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 361.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 361.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 361.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 360.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 360.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 359.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 359.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 357.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 357.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 356.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 356.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 355.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 355.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 353.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 353.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 353.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 353.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 352.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 352.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 350.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 350.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 349.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 349.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 346.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 346.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 346.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 346.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 346.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 345.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 345.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 345.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 343.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 343.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 343.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 342.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 341.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 341.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 340.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 340.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 340.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 338.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 337.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 337.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 333.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 331.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 331.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 330.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 329.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 329.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 328.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 325.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 324.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 324.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 324.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 324.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 323.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 323.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 322.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 321.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 320.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 320.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 320.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 319.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 319.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 319.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 319.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 318.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 317.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 316.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 316.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 314.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 313.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 313.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 313.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 313.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 312.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 312.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 312.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 311.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 311.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 311.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 311.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 311.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 310.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 310.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 309.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 309.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 306.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 305.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 305.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 304.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 304.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 303.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 302.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 301.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 300.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 300.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 299.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 298.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 297.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 297.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 296.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 295.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 292.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 292.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 290.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 290.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 290.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 289.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 289.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 289.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 288.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 287.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 286.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 286.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 285.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 283.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 283.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 281.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 280.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 279.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 279.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 278.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 278.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 277.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 276.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 275.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 274.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 274.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 272.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 272.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 271.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 271.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 269.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 269.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 269.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 267.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 267.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 266.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 265.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 262.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 260.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 257.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 253.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 251.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 250.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 247.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 247.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 246.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 242.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 240.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 238.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 232.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 231.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 229.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 224.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 223.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 211.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 209.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 207.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 200.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 173.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

387.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 387.7
FF:10164-103B2 76 years, female 387.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.4
Pig sample Sample description nTPM
Caudate
nTPM: 213.5
Samples: 4

Max nTPM: 267.9
Min nTPM: 181.2
Sample A Female 185.5
Sample B Female 219.2
Sample C Male 267.9
Sample D Male 181.2

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