BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA Brain:59.3 nTPM
GTEx:29.6 nTPM
FANTOM5:393.2 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:0.3 nTPM
Allen mouse:9.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 59.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.3
1781 Male, age 74, unknown 120.7
2289 Male, age 61, right hemisphere 84.7
2481 Female, age 94, left hemisphere 64.5
1854 Male, age 80, left hemisphere 52.2
1857 Female, age 85, left hemisphere 43.1
2846 Female, age 79, unknown 42.6
2290 Female, age 72, unknown 37.5
2288 Male, age 75, left hemisphere 29.4
Globus pallidus, externus
nTPM: 56.5
2772 Female, age 79, unknown 75.5
1996 Male, age 80, right hemisphere 72.8
2395 Male, age 75, both hemispheres 51.6
2646 Male, age 61, right hemisphere 47.3
2567 Female, age 72, unknown 35.6
Globus pallidus, internus
nTPM: 57.0
2037 Male, age 80, right hemisphere 68.9
2778 Female, age 91, both hemispheres 65.4
2483 Female, age 94, right hemisphere 60.6
2566 Female, age 72, unknown 58.9
1818 Male, age 74, unknown 57.0
2287 Male, age 75, right hemisphere 47.8
2111 Female, age 85, right hemisphere 40.8
Nucleus accumbens
nTPM: 36.1
2732 Male, age 80, right hemisphere 75.1
1783 Male, age 74, unknown 40.7
1806 Female, age 85, left hemisphere 39.0
2698 Female, age 72, unknown 33.3
2391 Female, age 94, left hemisphere 32.2
1856 Female, age 91, right hemisphere 30.8
2286 Male, age 75, left hemisphere 21.9
2824 Male, age 61, right hemisphere 15.8
Nucleus basalis of Meynert
nTPM: 53.9
2569 Male, age 61, both hemispheres 62.3
2484 Female, age 94, left hemisphere 58.3
2821 Male, age 75, both hemispheres 52.2
2393 Male, age 80, right hemisphere 42.6
Nucleus of the diagonal band
nTPM: 37.6
1979 Male, age 74, unknown 52.6
1812 Female, age 91, both hemispheres 41.7
2195 Female, age 85, both hemispheres 32.9
2775 Male, age 80, right hemisphere 32.2
2029 Male, age 61, right hemisphere 28.8
Putamen
nTPM: 43.1
2482 Female, age 94, left hemisphere 61.6
2489 Female, age 72, unknown 49.2
1937 Female, age 91, right hemisphere 42.3
2466 Female, age 79, unknown 42.2
2647 Male, age 75, left hemisphere 40.7
1838 Male, age 80, right hemisphere 34.3
1829 Male, age 74, unknown 31.3
Septal nuclei
nTPM: 45.3
2199 Male, age 80, right hemisphere 60.5
2394 Male, age 61, left hemisphere 53.2
2059 Female, age 85, both hemispheres 49.0
2009 Female, age 91, both hemispheres 46.1
2031 Female, age 72, unknown 40.4
1960 Male, age 74, unknown 37.3
2629 Female, age 94, right hemisphere 30.2
Stria terminalis, bed nucleus
nTPM: 28.4
2201 Male, age 74, unknown 31.7
1974 Female, age 91, both hemispheres 29.7
2486 Female, age 94, both hemispheres 23.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 29.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.6
Samples: 246

Max nTPM: 163.9
Min nTPM: 3.4
Std nTPM: 25.5
Median nTPM: 22.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 163.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 137.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 116.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 115.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 107.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 106.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 102.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 91.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 90.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 84.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 84.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.3
Samples: 246

Max nTPM: 163.8
Min nTPM: 3.2
Std nTPM: 24.9
Median nTPM: 17.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 163.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 134.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 121.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 107.2
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 101.6
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 99.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 94.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 85.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 84.7
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 83.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 81.3
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Brain - Putamen (basal ganglia)
Average nTPM: 28.5
Samples: 205

Max nTPM: 143.7
Min nTPM: 4.1
Std nTPM: 24.8
Median nTPM: 21.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 143.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 126.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 123.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 118.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 98.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 95.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 93.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 85.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 85.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 85.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 78.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 393.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 287.7
FF:10164-103B2 76 years, female 287.7
Nucleus accumbens
Scaled Tags Per Million: 58.0
FF:10037-101F1 23-56 years, mixed 58.0
Putamen
Scaled Tags Per Million: 227.4
FF:10176-103C5 60 years, female 227.4
Globus pallidus
Scaled Tags Per Million: 393.2
FF:10175-103C4 60 years, female 426.9
FF:10161-103A8 76 years, female 359.6

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 6.4
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.8
Sample A Female 2.1
Sample B Female 3.5
Sample C Male 2.7
Sample D Male 1.8
Putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.1
Sample A Female 3.7
Sample B Female 2.1
Sample C Male 2.9
Sample D Male 2.1
Septum
nTPM: 6.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 5.2
Sample C Male 8.7
Sample D Male 8.1
Ventral pallidum
nTPM: 3.4
Samples: 4

Max nTPM: 5.6
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 5.6
Sample C Male 4.2
Sample D Male 2.4

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.4
Sample C Female 0.1
Sample D Female 0.2
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.4
Sample D Female 0.4
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Male 0.3
Sample B Male 0.1
Sample C Female 0.6
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 9.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.4
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 13.0
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 6.8
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 10.2
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 3.4

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