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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:77.3 nTPM
HPA:40.6 nTPM
GTEx:77.3 nTPM
FANTOM5:715.4 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.6
overview
Male, age 65
Small intestine sample 232
nTPM: 29.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 50.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 45.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 36.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 77.3
Samples: 187

Max nTPM: 432.6
Min nTPM: 13.1
Std nTPM: 54.6
Median nTPM: 59.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 432.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 315.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 250.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 224.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 213.2
GTEX-1192X-2526-SM-59868 50-59 years, male 208.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 205.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 202.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 199.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 186.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 179.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 175.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 164.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 164.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 164.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 162.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 161.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 156.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 144.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 140.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 138.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 135.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 132.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 132.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 130.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 126.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 123.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 120.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 120.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 118.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 117.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 113.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 108.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 108.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 107.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 107.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 105.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 101.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 98.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 98.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 97.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 96.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 94.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 93.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 91.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 88.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 87.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 86.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 85.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 82.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 81.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 80.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 79.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 79.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 78.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 78.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 77.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 76.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 75.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 74.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 72.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 72.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 72.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 72.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 71.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 71.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 71.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 71.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 71.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 71.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 71.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 70.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 70.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 69.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 68.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 68.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 67.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 67.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 66.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 66.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 66.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 65.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 64.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 64.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 62.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 62.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 62.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 62.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 61.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 60.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 60.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 59.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 59.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 59.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 58.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 58.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 58.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 58.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 57.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 57.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 56.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 56.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 56.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 56.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 56.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 55.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 55.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 55.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 54.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 54.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 54.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 54.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 54.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 53.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 53.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 53.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 53.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 52.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 52.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 52.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 52.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 51.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 51.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 51.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 51.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 50.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 50.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 50.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 50.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 50.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 50.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 49.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 49.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 48.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 48.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 48.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 47.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 47.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 47.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 47.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 47.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 47.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 46.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 46.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 45.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 45.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 44.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 44.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 44.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 44.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 44.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 44.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 43.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 43.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 43.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 42.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 42.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 40.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 40.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 40.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 40.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 39.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 39.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 38.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 37.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 36.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 36.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 36.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 35.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 35.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 35.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 32.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 30.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 30.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 30.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 27.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 25.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 23.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 22.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 21.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 19.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 18.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 18.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 16.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 15.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 13.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 13.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

715.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 715.4
FF:10024-101D6 15,40,85 years, mixed 715.4

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