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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:511.0 nTPM
HPA Brain:131.7 nTPM
GTEx:511.0 nTPM
FANTOM5:104.4 Scaled Tags Per Million
Pig:143.5 nTPM
Mouse:150.9 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.7
Sample id Sample description nTPM
Amygdala
nTPM: 131.7
2514 Male, age 75, right hemisphere 144.8
2695 Female, age 67, right hemisphere 142.3
1987 Female, age 91, left hemisphere 132.1
2814 Male, age 76, right hemisphere 125.5
2517 Female, age 94, left hemisphere 114.0
Basal amygdala
nTPM: 115.0
2609 Male, age 75, right hemisphere 138.8
1955 Male, age 76, both hemispheres 135.0
2243 Female, age 91, right hemisphere 119.7
2110 Male, age 80, left hemisphere 111.5
2685 Female, age 94, left hemisphere 97.4
2827 Female, age 67, right hemisphere 87.4
Central amygdala
nTPM: 120.4
1905 Male, age 76, both hemispheres 125.3
2701 Female, age 91, right hemisphere 123.9
2826 Female, age 94, left hemisphere 122.1
2239 Male, age 80, left hemisphere 116.1
2515 Male, age 75, right hemisphere 114.4
Corticomedial amygdala
nTPM: 124.3
2242 Female, age 91, right hemisphere 128.2
2829 Male, age 80, left hemisphere 128.1
2429 Female, age 94, left hemisphere 127.6
2428 Male, age 75, right hemisphere 123.0
2240 Male, age 76, both hemispheres 122.2
2535 Female, age 67, right hemisphere 116.7
Lateral amygdala
nTPM: 103.8
2516 Male, age 75, right hemisphere 122.1
1883 Male, age 76, both hemispheres 112.4
2534 Female, age 94, left hemisphere 109.9
2256 Male, age 80, left hemisphere 97.4
2255 Female, age 91, right hemisphere 93.0
2830 Female, age 67, right hemisphere 87.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 511.0
Samples: 152

Max nTPM: 1669.5
Min nTPM: 249.7
Std nTPM: 177.9
Median nTPM: 488.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1669.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1212.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1203.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1056.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 969.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 915.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 871.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 844.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 790.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 788.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 712.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 697.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 676.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 666.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 661.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 654.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 654.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 653.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 647.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 626.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 621.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 611.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 610.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 592.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 579.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 579.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 571.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 567.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 566.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 566.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 563.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 563.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 561.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 557.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 553.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 553.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 552.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 552.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 550.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 544.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 544.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 543.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 541.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 541.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 539.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 539.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 535.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 534.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 529.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 528.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 528.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 527.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 523.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 523.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 522.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 519.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 519.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 518.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 517.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 513.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 511.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 508.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 508.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 507.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 506.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 503.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 503.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 502.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 501.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 499.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 498.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 495.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 492.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 491.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 488.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 488.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 488.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 486.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 483.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 480.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 477.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 473.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 472.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 471.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 469.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 466.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 466.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 466.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 461.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 456.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 455.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 453.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 451.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 449.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 449.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 448.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 447.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 447.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 444.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 443.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 440.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 435.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 430.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 427.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 424.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 424.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 423.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 423.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 422.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 421.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 420.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 418.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 415.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 407.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 407.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 407.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 407.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 404.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 403.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 402.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 402.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 400.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 392.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 390.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 387.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 385.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 384.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 382.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 377.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 368.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 366.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 365.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 362.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 356.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 354.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 353.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 352.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 349.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 347.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 344.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 342.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 337.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 331.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 322.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 321.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 320.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 318.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 318.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 315.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 307.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 298.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 249.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

104.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 104.4
FF:10151-102I7 76 years, female 104.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.5
Pig sample Sample description nTPM
Amygdala
nTPM: 143.5
Samples: 4

Max nTPM: 180.9
Min nTPM: 101.7
Sample A Female 180.9
Sample B Female 159.0
Sample C Male 132.5
Sample D Male 101.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 150.9
Samples: 4

Max nTPM: 157.3
Min nTPM: 138.2
Sample A Male 138.2
Sample B Male 154.3
Sample C Female 157.3
Sample D Female 153.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
71763951 Antisense, RP_050921_02_H07, Mouse strain C57BL/6J (56 days, male) 0.4

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