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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:257.2 nTPM
GTEx:257.2 nTPM
FANTOM5:58.9 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:1589.6 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 257.2
Samples: 105

Max nTPM: 401.1
Min nTPM: 154.3
Std nTPM: 39.5
Median nTPM:
322_1 76 years, male 401.1
35_1 74 years, female 353.8
319_1 81 years, male 340.9
4_1 88 years, female 338.0
321_1 62 years, female 330.1
218_1 71 years, female 326.3
375_1 74 years, female 322.1
377_1 82 years, female 321.8
2_1 77 years, female 319.1
17_1 71 years, male 312.8
6_1 73 years, female 311.3
379_1 60 years, male 307.7
153_1 70 years, female 304.4
384_1 83 years, male 297.5
394_1 75 years, female 297.5
162_1 79 years, female 296.8
447_1 81 years, male 293.1
389_1 86 years, female 291.2
237_1 82 years, male 290.6
265_1 87 years, male 289.5
452_1 88 years, female 287.1
142_1 61 years, female 286.2
120_1 70 years, female 285.1
163_1 78 years, male 284.0
518_1 75 years, female 282.3
173_1 67 years, male 282.0
139_1 64 years, female 280.3
386_1 76 years, male 280.1
354_1 81 years, female 279.6
316_1 62 years, male 278.4
376_1 75 years, female 273.5
503_1 68 years, male 272.7
119_1 70 years, female 270.9
243_1 75 years, male 269.6
404_1 82 years, female 269.4
352_1 62 years, male 267.9
313_1 79 years, female 267.4
217_1 76 years, male 265.2
315_1 62 years, female 265.2
246_1 77 years, male 263.0
115_1 83 years, male 262.3
293_1 68 years, female 262.0
320_1 89 years, female 260.8
126_1 63 years, male 260.3
177_1 74 years, male 256.9
117_1 61 years, male 256.1
415_1 77 years, female 255.0
499_1 55 years, female 253.6
18_1 88 years, male 253.1
99_1 64 years, male 252.5
396_1 62 years, male 251.9
307_1 66 years, female 251.7
266_1 85 years, male 250.5
468_1 89 years, male 250.4
286_1 68 years, female 250.0
355_1 70 years, female 249.7
145_1 84 years, male 249.6
229_1 69 years, female 247.7
318_1 68 years, male 247.6
495_1 57 years, female 245.8
109_1 81 years, female 245.7
264_1 73 years, female 244.6
356_1 87 years, female 244.5
506_1 65 years, male 244.5
348_1 84 years, male 243.5
311_1 78 years, male 243.3
350_1 84 years, female 242.3
324_1 76 years, male 241.5
349_1 83 years, male 241.2
526_1 61 years, male 240.4
9_1 66 years, female 240.2
42_1 85 years, male 240.0
351_1 91 years, male 239.7
317_1 60 years, male 239.5
405_1 91 years, male 239.1
254_1 77 years, female 238.4
406_1 79 years, male 237.7
189_1 76 years, male 237.6
335_1 73 years, female 235.4
251_1 78 years, male 235.3
295_1 61 years, female 233.0
425_1 59 years, female 232.7
137_1 83 years, male 230.3
347_1 72 years, male 229.8
292_1 71 years, male 226.2
517_1 88 years, male 225.8
149_1 88 years, male 224.3
353_1 82 years, female 223.8
501_1 88 years, male 223.7
89_1 63 years, male 222.9
41_1 94 years, female 220.3
466_1 57 years, female 217.4
480_1 63 years, male 217.2
288_1 66 years, female 216.8
414_1 84 years, female 216.5
308_1 70 years, female 215.5
291_1 76 years, male 207.4
43_1 64 years, female 204.9
81_1 67 years, male 201.8
172_1 72 years, female 197.3
491_1 89 years, female 193.9
490_1 67 years, female 185.1
32_1 67 years, male 177.4
314_1 67 years, male 173.4
413_1 59 years, female 154.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 58.9
FF:10030-101E3 24-65 years, mixed 58.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.5
Pig sample Sample description nTPM
Retina
nTPM: 57.5
Samples: 4

Max nTPM: 61.6
Min nTPM: 52.6
Sample A Female 58.0
Sample B Female 52.6
Sample C Male 61.6
Sample D Male 57.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1589.6
Mouse sample Sample description nTPM
Retina
nTPM: 1589.6
Samples: 4

Max nTPM: 1897.3
Min nTPM: 1410.0
Sample A Male 1534.8
Sample B Male 1516.3
Sample C Female 1897.3
Sample D Female 1410.0

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