We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TMA7
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TMA7
TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:423.2 nTPM
HPA Brain:157.2 nTPM
GTEx:423.2 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:168.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 137.3
1981 Female, age 72, midline 172.1
2048 Male, age 55, midline 139.4
2565 Male, age 75, midline 139.1
2816 Male, age 47, midline 118.5
2194 Female, age 79, both hemispheres 117.4
Cervical spinal cord, dorsal horn
nTPM: 157.2
2173 Female, age 72, unknown 175.5
2296 Male, age 66, both hemispheres 162.1
2069 Male, age 47, both hemispheres 156.5
2721 Male, age 90, both hemispheres 155.0
1877 Male, age 55, unknown 151.2
2297 Male, age 75, both hemispheres 142.8
Cervical spinal cord, ventral horn
nTPM: 145.5
2068 Male, age 55, unknown 161.4
2098 Female, age 72, unknown 157.0
2480 Male, age 75, both hemispheres 149.7
2809 Male, age 90, both hemispheres 144.5
2295 Male, age 66, both hemispheres 137.1
2820 Female, age 79, both hemispheres 123.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 423.2
Samples: 159

Max nTPM: 753.4
Min nTPM: 161.1
Std nTPM: 108.2
Median nTPM: 410.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 753.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 749.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 697.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 666.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 663.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 662.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 646.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 631.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 628.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 624.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 615.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 613.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 604.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 592.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 577.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 577.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 577.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 565.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 558.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 554.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 543.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 542.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 541.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 538.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 538.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 535.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 533.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 529.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 524.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 522.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 518.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 516.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 507.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 507.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 505.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 492.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 490.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 486.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 483.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 482.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 481.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 480.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 479.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 466.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 463.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 463.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 458.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 456.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 455.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 455.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 454.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 448.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 445.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 444.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 444.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 443.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 440.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 440.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 438.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 436.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 435.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 434.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 433.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 432.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 431.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 430.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 429.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 429.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 425.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 424.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 423.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 421.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 420.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 416.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 416.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 414.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 414.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 413.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 412.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 410.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 408.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 408.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 407.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 405.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 405.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 405.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 401.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 398.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 395.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 393.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 390.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 385.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 385.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 384.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 384.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 383.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 381.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 380.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 380.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 380.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 379.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 377.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 375.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 374.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 372.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 369.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 367.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 364.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 363.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 361.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 360.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 360.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 357.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 356.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 356.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 355.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 354.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 351.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 350.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 350.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 348.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 348.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 347.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 344.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 343.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 340.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 339.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 339.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 337.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 333.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 331.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 329.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 326.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 324.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 321.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 321.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 316.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 316.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 312.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 305.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 302.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 301.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 301.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 300.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 298.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 297.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 296.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 294.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 289.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 278.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 271.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 252.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 252.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 251.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 245.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 242.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 234.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 210.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 161.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 86.9
FF:10181-103D1 60 years, female 119.7
FF:10159-103A6 76 years, female 54.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 168.8
Samples: 4

Max nTPM: 196.3
Min nTPM: 142.0
Sample A Female 157.4
Sample B Female 179.4
Sample C Male 196.3
Sample D Male 142.0
Ventral spinal cord
nTPM: 168.8
Samples: 4

Max nTPM: 183.4
Min nTPM: 142.3
Sample A Female 142.3
Sample B Female 183.2
Sample C Male 183.4
Sample D Male 166.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org