We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PCDHGC3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PCDHGC3
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:347.0 nTPM
HPA Brain:213.8 nTPM
GTEx:347.0 nTPM
FANTOM5:291.1 Scaled Tags Per Million
Mouse:53.4 nTPM
Allen mouse:12.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.8
Sample id Sample description nTPM
Amygdala
nTPM: 213.8
2695 Female, age 67, right hemisphere 323.9
2514 Male, age 75, right hemisphere 212.7
2517 Female, age 94, left hemisphere 193.7
2814 Male, age 76, right hemisphere 170.5
1987 Female, age 91, left hemisphere 168.1
Basal amygdala
nTPM: 192.0
2609 Male, age 75, right hemisphere 307.9
2243 Female, age 91, right hemisphere 216.8
2827 Female, age 67, right hemisphere 174.7
2110 Male, age 80, left hemisphere 156.1
1955 Male, age 76, both hemispheres 154.7
2685 Female, age 94, left hemisphere 141.9
Central amygdala
nTPM: 201.4
2515 Male, age 75, right hemisphere 258.6
2239 Male, age 80, left hemisphere 202.5
2826 Female, age 94, left hemisphere 200.4
2701 Female, age 91, right hemisphere 188.4
1905 Male, age 76, both hemispheres 157.4
Corticomedial amygdala
nTPM: 189.3
2428 Male, age 75, right hemisphere 244.8
2829 Male, age 80, left hemisphere 210.2
2242 Female, age 91, right hemisphere 202.3
2535 Female, age 67, right hemisphere 170.3
2429 Female, age 94, left hemisphere 168.1
2240 Male, age 76, both hemispheres 140.2
Lateral amygdala
nTPM: 200.3
2516 Male, age 75, right hemisphere 285.7
2256 Male, age 80, left hemisphere 218.5
2830 Female, age 67, right hemisphere 192.3
2534 Female, age 94, left hemisphere 179.1
2255 Female, age 91, right hemisphere 178.5
1883 Male, age 76, both hemispheres 147.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 347.0
Samples: 152

Max nTPM: 723.0
Min nTPM: 59.3
Std nTPM: 109.4
Median nTPM: 339.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 723.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 702.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 684.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 610.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 602.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 564.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 557.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 556.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 540.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 537.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 531.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 519.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 511.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 493.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 490.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 486.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 463.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 462.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 453.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 452.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 448.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 446.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 445.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 442.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 434.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 433.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 429.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 423.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 422.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 418.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 418.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 417.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 416.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 413.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 406.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 402.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 402.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 400.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 397.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 393.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 393.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 388.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 386.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 385.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 383.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 382.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 382.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 380.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 377.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 376.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 375.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 375.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 375.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 375.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 374.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 373.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 372.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 367.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 365.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 365.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 363.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 360.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 357.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 356.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 355.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 352.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 351.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 350.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 349.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 348.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 347.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 346.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 344.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 343.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 343.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 340.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 338.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 337.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 336.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 335.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 334.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 333.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 332.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 331.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 329.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 328.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 325.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 324.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 324.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 323.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 323.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 321.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 318.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 318.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 317.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 316.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 312.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 311.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 310.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 305.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 305.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 302.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 300.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 299.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 294.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 293.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 290.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 286.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 285.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 284.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 281.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 277.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 273.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 270.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 270.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 268.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 267.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 266.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 266.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 266.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 265.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 263.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 260.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 258.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 256.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 253.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 253.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 249.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 245.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 244.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 243.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 242.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 241.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 233.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 231.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 217.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 215.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 214.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 210.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 199.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 197.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 196.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 196.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 195.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 190.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 189.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 186.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 169.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 168.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 114.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 113.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 59.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

291.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 291.1
FF:10151-102I7 76 years, female 291.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 53.4
Samples: 4

Max nTPM: 60.1
Min nTPM: 48.9
Sample A Male 53.4
Sample B Male 48.9
Sample C Female 60.1
Sample D Female 51.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 23.6
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 15.3
70784952 Antisense, RP_050706_01_E08, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org