MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.1 nTPM
HPA Brain:121.2 nTPM
GTEx:35.1 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:42.9 nTPM
Mouse:22.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 121.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.9
1827 Male, age 72, unknown 111.0
2411 Female, age 72, unknown 92.7
1870 Female, age 42, unknown 91.1
2586 Male, age 75, left hemisphere 86.3
1833 Male, age 53, unknown 80.1
2666 Male, age 74, left hemisphere 79.2
2219 Male, age 76, both hemispheres 74.2
1830 Male, age 51, unknown 72.5
2828 Female, age 72, unknown 70.7
2019 Male, age 18, unknown 60.8
Dorsal raphe nucleus
nTPM: 95.3
2298 Female, age 72, unknown 126.3
2047 Male, age 72, unknown 96.4
1828 Male, age 53, unknown 90.5
2016 Female, age 72, unknown 86.2
2750 Male, age 76, both hemispheres 77.2
Inferior colliculus
nTPM: 115.5
2097 Female, age 72, unknown 136.0
2849 Male, age 72, unknown 124.9
1848 Female, age 42, unknown 117.4
1890 Male, age 53, unknown 83.8
Median raphe nucleus
nTPM: 117.6
2220 Male, age 76, midline 117.6
Periaquaductal grey, anterior
nTPM: 121.2
2502 Female, age 75, unknown 142.0
1947 Male, age 18, unknown 115.5
1795 Male, age 51, unknown 106.1
Periaquaductal grey, dorsal
nTPM: 114.1
1840 Male, age 53, unknown 147.6
2850 Male, age 76, both hemispheres 110.8
1831 Male, age 72, unknown 100.4
2464 Female, age 72, unknown 97.7
Periaquaductal grey, lateral
nTPM: 107.8
2140 Male, age 76, both hemispheres 114.4
2053 Male, age 18, unknown 107.5
2272 Male, age 74, both hemispheres 101.7
Pretectal area
nTPM: 100.9
2224 Female, age 72, unknown 133.3
1816 Male, age 51, unknown 114.6
2825 Male, age 18, unknown 114.4
2273 Male, age 74, both hemispheres 110.5
1944 Female, age 72, unknown 104.2
2316 Male, age 76, right hemisphere 97.7
2407 Male, age 75, both hemispheres 97.6
2007 Male, age 72, unknown 94.5
1815 Male, age 53, unknown 84.3
1817 Female, age 42, unknown 84.2
2667 Female, age 75, unknown 74.5
Red nucleus
nTPM: 51.8
2584 Male, age 75, left hemisphere 72.9
2725 Female, age 75, unknown 64.8
2785 Male, age 18, unknown 58.1
1821 Female, age 72, unknown 56.2
2769 Male, age 72, unknown 54.3
2227 Male, age 72, unknown 54.1
1954 Female, age 42, unknown 50.3
2503 Female, age 72, unknown 46.1
2588 Male, age 74, left hemisphere 43.4
2823 Male, age 76, right hemisphere 42.1
1865 Male, age 51, unknown 39.6
1904 Male, age 53, unknown 39.2
Substantia nigra
nTPM: 85.1
1941 Male, age 53, unknown 114.4
2241 Male, age 72, unknown 100.5
1916 Female, age 42, unknown 94.7
2590 Female, age 75, unknown 89.8
2665 Male, age 74, both hemispheres 89.5
1889 Female, age 72, unknown 89.4
1851 Male, age 51, unknown 79.8
2699 Male, age 18, unknown 68.7
2583 Male, age 75, right hemisphere 66.3
2409 Female, age 72, unknown 57.8
Superior colliculus
nTPM: 90.9
2664 Male, age 75, both hemispheres 125.6
1839 Male, age 51, unknown 112.9
2261 Male, age 18, unknown 112.0
1796 Male, age 53, unknown 104.3
1895 Male, age 76, right hemisphere 104.3
2087 Female, age 72, unknown 94.5
2587 Male, age 74, left hemisphere 81.6
2668 Female, age 75, unknown 72.1
1913 Female, age 42, unknown 53.5
1995 Male, age 72, unknown 48.6
Ventral tegmental area
nTPM: 91.9
2218 Male, age 76, both hemispheres 104.5
1942 Male, age 51, unknown 103.6
1915 Female, age 42, unknown 94.7
2021 Male, age 53, unknown 92.2
2223 Female, age 72, unknown 80.8
2410 Female, age 72, unknown 75.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.1
Samples: 139

Max nTPM: 140.1
Min nTPM: 3.8
Std nTPM: 20.8
Median nTPM: 30.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 140.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 120.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 88.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 88.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 83.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 73.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 71.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 70.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.6
FF:10158-103A5 76 years, female 23.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 52.6
Min nTPM: 8.7
Sample A Female 52.6
Sample B Female 21.1
Sample C Male 44.8
Sample D Male 8.7
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 57.6
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 30.8
Sample C Male 56.1
Sample D Male 57.6
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 41.2
Min nTPM: 26.5
Sample B Female 29.0
Sample C Male 41.2
Sample D Male 26.5
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 60.3
Min nTPM: 17.1
Sample A Female 60.3
Sample B Female 17.1
Sample C Male 52.7
Sample D Male 41.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 21.3
Sample A Male 21.3
Sample B Male 23.3
Sample C Female 21.7
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69816374 Antisense, RP_050505_04_H07, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org