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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1131.6 nTPM
HPA Brain:59.4 nTPM
GTEx:1131.6 nTPM
FANTOM5:45.5 Scaled Tags Per Million
Pig:69.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 42.3
1981 Female, age 72, midline 46.2
2565 Male, age 75, midline 45.0
2048 Male, age 55, midline 43.5
2816 Male, age 47, midline 42.1
2194 Female, age 79, both hemispheres 34.6
Cervical spinal cord, dorsal horn
nTPM: 37.6
2173 Female, age 72, unknown 61.2
2069 Male, age 47, both hemispheres 41.1
1877 Male, age 55, unknown 35.3
2296 Male, age 66, both hemispheres 34.7
2297 Male, age 75, both hemispheres 32.2
2721 Male, age 90, both hemispheres 20.9
Cervical spinal cord, ventral horn
nTPM: 59.4
2809 Male, age 90, both hemispheres 90.5
2480 Male, age 75, both hemispheres 77.7
2098 Female, age 72, unknown 55.2
2068 Male, age 55, unknown 54.0
2295 Male, age 66, both hemispheres 41.8
2820 Female, age 79, both hemispheres 37.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1131.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1131.6
Samples: 159

Max nTPM: 2346.8
Min nTPM: 431.5
Std nTPM: 379.7
Median nTPM: 1073.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2346.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2265.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2187.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2097.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2016.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1933.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1922.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1865.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1847.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1743.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1740.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1706.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1705.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1661.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1652.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1645.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1627.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1610.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1607.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1606.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1585.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1581.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1545.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1533.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1525.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1514.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1509.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1506.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1498.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1487.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1487.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1476.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1465.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1430.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1428.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1409.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1401.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1399.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1345.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1339.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1332.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1328.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1326.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1319.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1301.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1292.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1278.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1271.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1268.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1266.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1266.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1260.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1258.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1248.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1248.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1230.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1223.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1219.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1213.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1205.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1169.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1160.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1153.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1152.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1145.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1145.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1142.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1135.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1134.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1130.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1129.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1126.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1123.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1116.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1106.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1104.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1098.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1076.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1075.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1073.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1073.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1070.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1058.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1039.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1038.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1029.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1024.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1021.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1016.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1007.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1005.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1005.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1004.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1000.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 978.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 973.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 973.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 966.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 954.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 954.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 953.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 952.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 948.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 948.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 943.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 935.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 933.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 932.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 932.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 931.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 927.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 926.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 911.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 903.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 900.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 890.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 889.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 878.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 846.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 846.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 838.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 828.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 822.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 822.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 819.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 818.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 816.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 814.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 812.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 802.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 788.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 780.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 750.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 740.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 738.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 735.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 734.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 732.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 721.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 713.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 708.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 701.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 692.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 689.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 686.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 680.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 675.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 673.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 658.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 631.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 621.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 614.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 603.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 593.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 576.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 478.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 477.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 445.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 431.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 45.5
FF:10181-103D1 60 years, female 50.1
FF:10159-103A6 76 years, female 40.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 69.6
Samples: 4

Max nTPM: 88.3
Min nTPM: 54.4
Sample A Female 56.6
Sample B Female 78.9
Sample C Male 88.3
Sample D Male 54.4
Ventral spinal cord
nTPM: 68.8
Samples: 4

Max nTPM: 82.1
Min nTPM: 57.6
Sample A Female 57.6
Sample B Female 73.6
Sample C Male 82.1
Sample D Male 61.9

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