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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:74.6 nTPM
HPA Brain:65.4 nTPM
GTEx:74.6 nTPM
FANTOM5:96.0 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:192.7 nTPM
Allen mouse:6.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.4
Sample id Sample description nTPM
Amygdala
nTPM: 65.1
2814 Male, age 76, right hemisphere 82.7
2514 Male, age 75, right hemisphere 67.6
1987 Female, age 91, left hemisphere 61.1
2517 Female, age 94, left hemisphere 58.4
2695 Female, age 67, right hemisphere 55.9
Basal amygdala
nTPM: 58.7
2110 Male, age 80, left hemisphere 65.7
2243 Female, age 91, right hemisphere 63.6
1955 Male, age 76, both hemispheres 62.0
2609 Male, age 75, right hemisphere 61.6
2685 Female, age 94, left hemisphere 51.7
2827 Female, age 67, right hemisphere 47.2
Central amygdala
nTPM: 65.4
1905 Male, age 76, both hemispheres 78.0
2826 Female, age 94, left hemisphere 69.8
2239 Male, age 80, left hemisphere 64.4
2515 Male, age 75, right hemisphere 59.8
2701 Female, age 91, right hemisphere 55.2
Corticomedial amygdala
nTPM: 59.0
2829 Male, age 80, left hemisphere 66.7
2240 Male, age 76, both hemispheres 61.8
2242 Female, age 91, right hemisphere 61.5
2428 Male, age 75, right hemisphere 60.1
2429 Female, age 94, left hemisphere 56.6
2535 Female, age 67, right hemisphere 47.3
Lateral amygdala
nTPM: 61.0
1883 Male, age 76, both hemispheres 73.2
2534 Female, age 94, left hemisphere 68.3
2516 Male, age 75, right hemisphere 63.2
2830 Female, age 67, right hemisphere 59.5
2256 Male, age 80, left hemisphere 51.7
2255 Female, age 91, right hemisphere 49.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.6
Samples: 152

Max nTPM: 148.6
Min nTPM: 42.6
Std nTPM: 19.7
Median nTPM: 72.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 148.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 141.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 116.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 115.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 100.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 99.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 98.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 97.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 96.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 95.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 95.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 95.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 93.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 91.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 90.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 90.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 90.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 89.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 88.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 88.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 87.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 87.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 86.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 85.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 83.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 83.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 83.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 83.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 83.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 83.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 82.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 81.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 81.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 81.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 80.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 80.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 79.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 78.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 78.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 76.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 75.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 75.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 75.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 74.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 74.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 74.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 74.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 74.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 74.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 74.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 73.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 73.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 73.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 72.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 72.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 72.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 71.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 71.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 71.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 71.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 71.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 70.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 70.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 70.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 68.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 68.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 67.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 67.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 67.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 67.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 66.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 65.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 65.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 65.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 65.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 64.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 64.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 64.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 63.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 62.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 62.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 61.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 61.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 61.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 61.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 60.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 60.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 59.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 59.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 59.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 58.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 57.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 57.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 55.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 55.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 53.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 52.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 52.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 52.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 50.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 50.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 50.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 49.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 49.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 48.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 47.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 47.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 46.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 46.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 45.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 43.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 42.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.0
FF:10151-102I7 76 years, female 96.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.5
Pig sample Sample description nTPM
Amygdala
nTPM: 61.5
Samples: 4

Max nTPM: 83.3
Min nTPM: 50.9
Sample A Female 83.3
Sample B Female 55.3
Sample C Male 56.5
Sample D Male 50.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 192.7
Samples: 4

Max nTPM: 209.4
Min nTPM: 186.6
Sample A Male 186.6
Sample B Male 209.4
Sample C Female 187.1
Sample D Female 187.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.6
77280335 Antisense, RP_070116_01_B08, Mouse strain C57BL/6J (56 days, male) 6.7
68076540 Antisense, RP_040923_02_F01, Mouse strain C57BL/6J (56 days, male) 6.5

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