MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.3 nTPM
HPA Brain:79.0 nTPM
GTEx:71.3 nTPM
FANTOM5:79.9 Scaled Tags Per Million
Pig:90.3 nTPM
Mouse:160.5 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
2019 Male, age 18, unknown 79.8
2411 Female, age 72, unknown 65.7
1827 Male, age 72, unknown 62.6
2219 Male, age 76, both hemispheres 61.7
1870 Female, age 42, unknown 58.7
1833 Male, age 53, unknown 57.7
2666 Male, age 74, left hemisphere 57.5
2828 Female, age 72, unknown 56.1
1830 Male, age 51, unknown 52.9
2586 Male, age 75, left hemisphere 46.3
Dorsal raphe nucleus
nTPM: 66.1
2298 Female, age 72, unknown 79.8
2750 Male, age 76, both hemispheres 73.1
2047 Male, age 72, unknown 68.2
1828 Male, age 53, unknown 58.2
2016 Female, age 72, unknown 51.0
Inferior colliculus
nTPM: 57.3
2097 Female, age 72, unknown 71.0
1890 Male, age 53, unknown 53.8
2849 Male, age 72, unknown 52.4
1848 Female, age 42, unknown 52.0
Median raphe nucleus
nTPM: 79.0
2220 Male, age 76, midline 79.0
Periaquaductal grey, anterior
nTPM: 58.8
1947 Male, age 18, unknown 60.9
1795 Male, age 51, unknown 60.2
2502 Female, age 75, unknown 55.4
Periaquaductal grey, dorsal
nTPM: 51.1
1840 Male, age 53, unknown 55.2
2850 Male, age 76, both hemispheres 54.1
2464 Female, age 72, unknown 48.7
1831 Male, age 72, unknown 46.4
Periaquaductal grey, lateral
nTPM: 49.5
2272 Male, age 74, both hemispheres 57.0
2140 Male, age 76, both hemispheres 48.3
2053 Male, age 18, unknown 43.2
Pretectal area
nTPM: 66.6
1817 Female, age 42, unknown 90.3
1944 Female, age 72, unknown 80.9
1816 Male, age 51, unknown 79.8
2007 Male, age 72, unknown 79.3
1815 Male, age 53, unknown 71.0
2224 Female, age 72, unknown 65.9
2667 Female, age 75, unknown 65.0
2273 Male, age 74, both hemispheres 54.7
2407 Male, age 75, both hemispheres 49.5
2825 Male, age 18, unknown 48.5
2316 Male, age 76, right hemisphere 47.6
Red nucleus
nTPM: 53.5
2785 Male, age 18, unknown 69.7
1821 Female, age 72, unknown 63.7
2725 Female, age 75, unknown 54.3
1954 Female, age 42, unknown 54.2
1904 Male, age 53, unknown 52.9
1865 Male, age 51, unknown 51.6
2227 Male, age 72, unknown 51.5
2503 Female, age 72, unknown 50.3
2769 Male, age 72, unknown 49.6
2823 Male, age 76, right hemisphere 49.0
2584 Male, age 75, left hemisphere 48.0
2588 Male, age 74, left hemisphere 47.3
Substantia nigra
nTPM: 68.7
1916 Female, age 42, unknown 94.2
1851 Male, age 51, unknown 77.5
1889 Female, age 72, unknown 76.1
2241 Male, age 72, unknown 75.9
1941 Male, age 53, unknown 71.2
2665 Male, age 74, both hemispheres 66.3
2409 Female, age 72, unknown 66.1
2583 Male, age 75, right hemisphere 56.2
2699 Male, age 18, unknown 52.4
2590 Female, age 75, unknown 51.1
Superior colliculus
nTPM: 58.5
2668 Female, age 75, unknown 79.2
2087 Female, age 72, unknown 72.6
1796 Male, age 53, unknown 62.7
2261 Male, age 18, unknown 62.0
1895 Male, age 76, right hemisphere 57.0
1913 Female, age 42, unknown 56.6
2587 Male, age 74, left hemisphere 52.4
1839 Male, age 51, unknown 51.7
1995 Male, age 72, unknown 50.2
2664 Male, age 75, both hemispheres 40.8
Ventral tegmental area
nTPM: 65.4
2410 Female, age 72, unknown 74.9
2218 Male, age 76, both hemispheres 72.9
1915 Female, age 42, unknown 67.3
2223 Female, age 72, unknown 60.5
2021 Male, age 53, unknown 58.7
1942 Male, age 51, unknown 58.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.3
Samples: 139

Max nTPM: 143.4
Min nTPM: 43.6
Std nTPM: 19.3
Median nTPM: 67.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 143.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 135.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 128.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 114.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 113.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 112.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 109.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 102.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 100.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.9
FF:10158-103A5 76 years, female 79.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 90.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.0
Samples: 4

Max nTPM: 101.0
Min nTPM: 67.3
Sample A Female 101.0
Sample B Female 67.3
Sample C Male 91.8
Sample D Male 71.8
Midbrain
nTPM: 90.4
Samples: 4

Max nTPM: 122.3
Min nTPM: 76.2
Sample A Female 122.3
Sample B Female 76.8
Sample C Male 86.1
Sample D Male 76.2
Periaqueductal gray
nTPM: 65.3
Samples: 3

Max nTPM: 73.8
Min nTPM: 55.7
Sample B Female 66.3
Sample C Male 73.8
Sample D Male 55.7
Superior colliculi
nTPM: 85.7
Samples: 4

Max nTPM: 97.8
Min nTPM: 68.3
Sample A Female 97.6
Sample B Female 68.3
Sample C Male 97.8
Sample D Male 79.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 160.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.5
Samples: 4

Max nTPM: 168.8
Min nTPM: 154.2
Sample A Male 168.8
Sample B Male 156.1
Sample C Female 154.2
Sample D Female 163.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
77280335 Antisense, RP_070116_01_B08, Mouse strain C57BL/6J (56 days, male) 2.4
68076540 Antisense, RP_040923_02_F01, Mouse strain C57BL/6J (56 days, male) 1.5

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