MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.0 nTPM
HPA Brain:106.9 nTPM
GTEx:131.0 nTPM
FANTOM5:96.2 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:133.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 106.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.6
2586 Male, age 75, left hemisphere 158.5
2411 Female, age 72, unknown 99.3
1870 Female, age 42, unknown 96.6
2019 Male, age 18, unknown 96.2
1827 Male, age 72, unknown 89.8
1830 Male, age 51, unknown 78.3
2828 Female, age 72, unknown 75.5
1833 Male, age 53, unknown 74.1
2666 Male, age 74, left hemisphere 70.4
2219 Male, age 76, both hemispheres 67.5
Dorsal raphe nucleus
nTPM: 86.1
2047 Male, age 72, unknown 97.3
2016 Female, age 72, unknown 87.4
1828 Male, age 53, unknown 85.7
2298 Female, age 72, unknown 83.6
2750 Male, age 76, both hemispheres 76.6
Inferior colliculus
nTPM: 78.7
1890 Male, age 53, unknown 92.9
1848 Female, age 42, unknown 79.7
2097 Female, age 72, unknown 75.5
2849 Male, age 72, unknown 66.8
Median raphe nucleus
nTPM: 85.6
2220 Male, age 76, midline 85.6
Periaquaductal grey, anterior
nTPM: 106.9
2502 Female, age 75, unknown 128.7
1947 Male, age 18, unknown 102.9
1795 Male, age 51, unknown 89.1
Periaquaductal grey, dorsal
nTPM: 82.3
1840 Male, age 53, unknown 88.4
2850 Male, age 76, both hemispheres 84.5
1831 Male, age 72, unknown 78.5
2464 Female, age 72, unknown 78.0
Periaquaductal grey, lateral
nTPM: 73.9
2053 Male, age 18, unknown 85.5
2140 Male, age 76, both hemispheres 75.1
2272 Male, age 74, both hemispheres 61.0
Pretectal area
nTPM: 84.0
2007 Male, age 72, unknown 102.2
1944 Female, age 72, unknown 101.3
1816 Male, age 51, unknown 94.5
1817 Female, age 42, unknown 89.3
2667 Female, age 75, unknown 88.8
1815 Male, age 53, unknown 79.4
2224 Female, age 72, unknown 79.1
2407 Male, age 75, both hemispheres 77.5
2825 Male, age 18, unknown 75.9
2316 Male, age 76, right hemisphere 70.6
2273 Male, age 74, both hemispheres 65.0
Red nucleus
nTPM: 88.3
2588 Male, age 74, left hemisphere 110.5
2503 Female, age 72, unknown 98.8
1865 Male, age 51, unknown 97.9
2584 Male, age 75, left hemisphere 97.3
1821 Female, age 72, unknown 92.6
1954 Female, age 42, unknown 89.0
2227 Male, age 72, unknown 85.4
1904 Male, age 53, unknown 83.0
2785 Male, age 18, unknown 80.8
2769 Male, age 72, unknown 80.2
2823 Male, age 76, right hemisphere 73.2
2725 Female, age 75, unknown 70.9
Substantia nigra
nTPM: 91.6
1916 Female, age 42, unknown 107.1
1851 Male, age 51, unknown 106.1
1889 Female, age 72, unknown 106.1
2590 Female, age 75, unknown 96.6
2583 Male, age 75, right hemisphere 96.1
2699 Male, age 18, unknown 85.9
2241 Male, age 72, unknown 85.0
1941 Male, age 53, unknown 82.6
2409 Female, age 72, unknown 81.6
2665 Male, age 74, both hemispheres 69.0
Superior colliculus
nTPM: 81.4
2587 Male, age 74, left hemisphere 90.7
1895 Male, age 76, right hemisphere 87.8
2664 Male, age 75, both hemispheres 85.5
1796 Male, age 53, unknown 85.0
1913 Female, age 42, unknown 83.9
1995 Male, age 72, unknown 83.6
2261 Male, age 18, unknown 81.8
2668 Female, age 75, unknown 72.4
2087 Female, age 72, unknown 72.2
1839 Male, age 51, unknown 71.1
Ventral tegmental area
nTPM: 89.3
2021 Male, age 53, unknown 96.1
2410 Female, age 72, unknown 94.7
1915 Female, age 42, unknown 92.8
1942 Male, age 51, unknown 91.1
2218 Male, age 76, both hemispheres 82.1
2223 Female, age 72, unknown 78.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 131.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.0
Samples: 139

Max nTPM: 214.4
Min nTPM: 81.7
Std nTPM: 27.4
Median nTPM: 125.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 214.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 211.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 206.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 204.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 202.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 189.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 189.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 182.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 171.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 170.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.2
FF:10158-103A5 76 years, female 96.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 39.1
Min nTPM: 26.1
Sample A Female 39.1
Sample B Female 26.1
Sample C Male 31.4
Sample D Male 29.2
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 40.2
Min nTPM: 29.3
Sample A Female 40.2
Sample B Female 31.7
Sample C Male 33.9
Sample D Male 29.3
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 36.2
Min nTPM: 21.0
Sample B Female 26.5
Sample C Male 36.2
Sample D Male 21.0
Superior colliculi
nTPM: 32.8
Samples: 4

Max nTPM: 38.7
Min nTPM: 23.6
Sample A Female 38.7
Sample B Female 23.6
Sample C Male 37.3
Sample D Male 31.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 133.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.4
Samples: 4

Max nTPM: 143.3
Min nTPM: 124.3
Sample A Male 143.3
Sample B Male 124.3
Sample C Female 124.5
Sample D Female 141.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
68341603 Antisense, RP_041207_01_H01, Mouse strain C57BL/6J (56 days, male) 3.1

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