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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:109.0 nTPM
HPA Brain:97.5 nTPM
GTEx:109.0 nTPM
FANTOM5:134.1 Scaled Tags Per Million
Pig:34.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 97.5
2565 Male, age 75, midline 114.0
2194 Female, age 79, both hemispheres 100.3
1981 Female, age 72, midline 97.1
2048 Male, age 55, midline 91.7
2816 Male, age 47, midline 84.6
Cervical spinal cord, dorsal horn
nTPM: 89.6
1877 Male, age 55, unknown 97.8
2173 Female, age 72, unknown 96.0
2069 Male, age 47, both hemispheres 93.6
2296 Male, age 66, both hemispheres 86.9
2721 Male, age 90, both hemispheres 86.7
2297 Male, age 75, both hemispheres 76.3
Cervical spinal cord, ventral horn
nTPM: 87.5
2480 Male, age 75, both hemispheres 111.5
2098 Female, age 72, unknown 94.0
2809 Male, age 90, both hemispheres 91.9
2068 Male, age 55, unknown 80.7
2295 Male, age 66, both hemispheres 77.7
2820 Female, age 79, both hemispheres 69.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 109.0
Samples: 159

Max nTPM: 176.2
Min nTPM: 68.6
Std nTPM: 21.7
Median nTPM: 106.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 176.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 171.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 169.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 168.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 165.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 161.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 161.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 157.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 145.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 144.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 141.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 141.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 140.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 140.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 139.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 137.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 137.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 135.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 135.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 134.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 134.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 133.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 132.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 132.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 131.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 131.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 129.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 127.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 126.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 125.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 125.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 124.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 123.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 123.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 123.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 122.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 121.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 121.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 120.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 120.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 119.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 118.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 118.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 118.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 118.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 117.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 117.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 116.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 116.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 115.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 114.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 114.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 114.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 114.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 113.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 113.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 112.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 112.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 111.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 111.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 111.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 110.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 110.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 109.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 109.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 109.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 109.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 108.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 108.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 107.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 107.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 106.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 106.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 106.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 105.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 105.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 105.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 105.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 105.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 104.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 104.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 104.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 104.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 104.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 102.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 101.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 101.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 100.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 100.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 100.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 100.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 99.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 98.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 98.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 98.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 98.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 98.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 98.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 97.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 97.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 97.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 97.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 96.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 96.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 96.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 96.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 96.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 96.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 96.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 95.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 95.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 95.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 94.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 93.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 92.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 92.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 90.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 89.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 89.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 89.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 89.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 89.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 88.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 88.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 88.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 88.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 87.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 87.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 87.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 87.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 86.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 85.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 84.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 84.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 83.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 82.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 82.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 81.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 81.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 79.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 78.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 77.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 77.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 75.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 75.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 74.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 72.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 71.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 68.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 134.1
FF:10181-103D1 60 years, female 191.4
FF:10159-103A6 76 years, female 76.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 32.2
Samples: 4

Max nTPM: 37.4
Min nTPM: 28.0
Sample A Female 33.3
Sample B Female 30.1
Sample C Male 37.4
Sample D Male 28.0
Ventral spinal cord
nTPM: 34.0
Samples: 4

Max nTPM: 40.5
Min nTPM: 29.9
Sample A Female 29.9
Sample B Female 32.2
Sample C Male 40.5
Sample D Male 33.3

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