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DBNDD2
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  • DBNDD2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:354.0 nTPM
FANTOM5:158.4 Scaled Tags Per Million
Pig:44.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043991
Glial cells High
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 354.0
Samples: 246

Max nTPM: 1343.8
Min nTPM: 103.8
Std nTPM: 175.4
Median nTPM: 319.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1343.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1015.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 926.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 918.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 853.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 825.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 790.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 742.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 740.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 738.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 719.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 706.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 697.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 681.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 675.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 661.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 661.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 655.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 648.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 626.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 625.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 611.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 604.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 604.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 600.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 590.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 578.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 569.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 567.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 543.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 540.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 537.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 534.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 533.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 523.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 521.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 521.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 513.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 511.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 504.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 502.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 501.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 479.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 477.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 477.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 472.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 471.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 467.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 463.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 453.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 452.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 444.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 444.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 442.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 441.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 440.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 438.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 438.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 427.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 422.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 422.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 419.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 417.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 414.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 408.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 408.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 408.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 405.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 404.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 402.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 402.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 399.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 393.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 392.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 392.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 386.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 384.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 383.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 382.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 381.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 378.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 378.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 378.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 375.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 373.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 373.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 372.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 371.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 369.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 369.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 367.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 367.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 366.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 365.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 363.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 359.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 359.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 359.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 358.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 356.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 355.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 352.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 349.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 348.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 348.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 347.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 346.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 343.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 343.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 340.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 338.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 338.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 335.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 332.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 332.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 331.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 329.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 325.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 324.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 323.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 322.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 322.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 321.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 317.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 316.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 314.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 312.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 308.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 308.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 307.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 303.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 303.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 302.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 298.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 295.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 294.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 292.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 291.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 291.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 290.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 289.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 289.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 283.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 279.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 278.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 277.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 276.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 274.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 270.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 268.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 266.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 264.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 263.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 263.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 263.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 262.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 261.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 260.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 260.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 260.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 255.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 252.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 250.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 250.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 248.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 248.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 248.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 247.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 245.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 244.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 244.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 241.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 241.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 237.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 236.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 232.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 232.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 231.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 230.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 229.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 228.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 227.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 226.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 225.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 223.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 223.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 223.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 223.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 222.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 222.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 221.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 221.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 220.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 217.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 217.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 216.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 216.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 216.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 215.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 215.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 214.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 213.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 213.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 210.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 210.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 209.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 207.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 207.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 205.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 203.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 199.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 196.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 196.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 196.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 195.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 194.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 193.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 191.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 187.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 186.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 185.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 182.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 180.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 177.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 176.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 176.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 175.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 173.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 172.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 170.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 169.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 168.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 165.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 163.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 162.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 162.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 160.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 160.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 159.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 151.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 149.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 144.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 130.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 128.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 125.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 103.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

158.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 158.4
FF:10164-103B2 76 years, female 158.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.3
Pig sample Sample description nTPM
Caudate
nTPM: 44.3
Samples: 4

Max nTPM: 47.8
Min nTPM: 40.8
Sample A Female 43.1
Sample B Female 45.6
Sample C Male 47.8
Sample D Male 40.8

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