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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1047.4 nTPM
HPA Brain:223.6 nTPM
GTEx:1047.4 nTPM
FANTOM5:81.7 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.6
Sample id Sample description nTPM
Amygdala
nTPM: 223.6
2695 Female, age 67, right hemisphere 451.5
1987 Female, age 91, left hemisphere 255.1
2514 Male, age 75, right hemisphere 179.2
2814 Male, age 76, right hemisphere 125.7
2517 Female, age 94, left hemisphere 106.3
Basal amygdala
nTPM: 139.3
2827 Female, age 67, right hemisphere 228.4
2609 Male, age 75, right hemisphere 225.4
2110 Male, age 80, left hemisphere 176.7
1955 Male, age 76, both hemispheres 94.6
2243 Female, age 91, right hemisphere 57.9
2685 Female, age 94, left hemisphere 52.9
Central amygdala
nTPM: 129.4
2826 Female, age 94, left hemisphere 181.0
2515 Male, age 75, right hemisphere 169.5
1905 Male, age 76, both hemispheres 116.2
2239 Male, age 80, left hemisphere 112.6
2701 Female, age 91, right hemisphere 67.5
Corticomedial amygdala
nTPM: 101.7
2428 Male, age 75, right hemisphere 162.1
2429 Female, age 94, left hemisphere 118.5
2829 Male, age 80, left hemisphere 108.4
2535 Female, age 67, right hemisphere 100.2
2240 Male, age 76, both hemispheres 70.0
2242 Female, age 91, right hemisphere 51.1
Lateral amygdala
nTPM: 191.5
2516 Male, age 75, right hemisphere 534.2
2830 Female, age 67, right hemisphere 197.3
2534 Female, age 94, left hemisphere 160.5
2256 Male, age 80, left hemisphere 108.0
1883 Male, age 76, both hemispheres 86.1
2255 Female, age 91, right hemisphere 62.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1047.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1047.4
Samples: 152

Max nTPM: 9461.2
Min nTPM: 40.6
Std nTPM: 1401.0
Median nTPM: 600.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9461.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 8803.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 5621.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 5577.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 5000.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4305.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4021.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3922.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3585.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3287.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3096.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2826.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2736.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2381.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2293.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2247.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2134.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2098.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2051.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1920.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1901.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1897.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1891.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1825.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1726.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1695.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1606.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1515.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1490.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1364.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1328.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1252.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1245.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1236.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1194.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1182.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1167.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1158.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1138.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1138.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1103.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1080.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1077.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1075.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1059.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1054.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1052.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1052.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1011.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 973.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 945.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 936.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 933.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 914.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 902.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 899.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 896.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 864.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 840.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 827.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 810.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 784.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 775.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 770.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 758.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 752.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 714.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 703.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 687.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 682.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 659.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 640.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 638.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 623.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 616.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 613.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 586.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 580.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 575.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 567.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 562.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 552.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 539.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 517.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 489.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 488.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 470.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 463.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 462.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 461.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 436.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 421.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 420.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 409.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 408.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 404.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 391.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 389.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 376.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 373.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 364.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 362.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 359.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 349.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 344.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 335.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 325.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 312.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 308.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 306.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 305.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 293.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 291.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 283.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 281.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 276.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 260.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 255.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 242.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 223.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 219.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 210.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 205.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 193.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 192.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 188.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 186.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 185.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 180.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 174.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 174.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 165.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 152.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 152.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 149.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 145.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 142.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 140.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 140.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 135.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 134.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 132.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 126.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 113.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 78.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 56.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 52.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.7
FF:10151-102I7 76 years, female 81.7

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