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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1210.7 nTPM
HPA Brain:575.7 nTPM
GTEx:1210.7 nTPM
FANTOM5:226.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

575.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 134.2
1981 Female, age 72, midline 183.4
2048 Male, age 55, midline 139.3
2565 Male, age 75, midline 129.7
2816 Male, age 47, midline 116.8
2194 Female, age 79, both hemispheres 101.5
Cervical spinal cord, dorsal horn
nTPM: 120.3
2173 Female, age 72, unknown 186.4
2297 Male, age 75, both hemispheres 131.1
2721 Male, age 90, both hemispheres 115.5
2296 Male, age 66, both hemispheres 109.9
1877 Male, age 55, unknown 99.3
2069 Male, age 47, both hemispheres 79.7
Cervical spinal cord, ventral horn
nTPM: 575.7
2098 Female, age 72, unknown 1349.9
2480 Male, age 75, both hemispheres 982.4
2809 Male, age 90, both hemispheres 467.5
2820 Female, age 79, both hemispheres 253.1
2295 Male, age 66, both hemispheres 226.9
2068 Male, age 55, unknown 174.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1210.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1210.7
Samples: 159

Max nTPM: 8257.8
Min nTPM: 54.5
Std nTPM: 1422.9
Median nTPM: 718.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 8257.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8228.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 6254.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 5571.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 5356.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 5258.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5119.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 4489.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 4340.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 4006.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3696.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 3108.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3057.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 2952.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2891.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2738.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2706.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2693.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2587.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2398.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2338.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2147.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2135.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2002.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1975.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1864.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1843.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1807.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1767.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1740.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1708.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1708.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1697.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1694.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1666.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1629.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1617.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1579.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1544.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1514.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1474.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1462.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1403.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1366.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1355.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1354.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1354.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1352.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1326.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1314.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1308.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1300.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1244.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1211.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1196.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1177.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1173.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1129.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1041.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1032.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1010.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1010.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 994.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 981.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 969.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 945.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 939.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 932.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 919.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 918.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 918.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 868.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 847.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 829.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 809.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 795.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 785.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 773.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 750.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 718.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 712.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 711.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 709.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 707.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 701.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 689.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 669.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 660.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 632.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 628.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 617.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 615.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 588.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 582.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 582.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 553.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 550.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 537.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 528.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 510.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 509.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 490.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 487.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 453.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 422.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 419.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 399.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 383.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 380.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 378.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 366.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 365.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 356.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 348.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 344.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 342.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 335.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 330.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 325.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 320.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 317.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 310.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 309.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 296.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 286.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 284.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 279.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 261.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 255.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 255.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 241.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 239.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 238.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 231.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 217.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 213.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 197.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 193.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 191.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 186.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 180.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 171.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 168.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 166.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 166.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 162.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 162.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 157.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 140.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 117.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 115.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 86.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 84.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 74.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 67.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 64.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 60.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 56.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

226.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 226.4
FF:10181-103D1 60 years, female 368.4
FF:10159-103A6 76 years, female 84.5

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