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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:854.6 nTPM
HPA Brain:486.6 nTPM
GTEx:854.6 nTPM
FANTOM5:1838.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

486.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 374.7
1981 Female, age 72, midline 583.4
2048 Male, age 55, midline 395.9
2816 Male, age 47, midline 371.6
2194 Female, age 79, both hemispheres 278.9
2565 Male, age 75, midline 243.5
Cervical spinal cord, dorsal horn
nTPM: 486.6
2296 Male, age 66, both hemispheres 1002.0
2173 Female, age 72, unknown 718.1
2069 Male, age 47, both hemispheres 579.6
1877 Male, age 55, unknown 296.3
2721 Male, age 90, both hemispheres 170.1
2297 Male, age 75, both hemispheres 153.6
Cervical spinal cord, ventral horn
nTPM: 399.6
2098 Female, age 72, unknown 726.9
2068 Male, age 55, unknown 496.1
2480 Male, age 75, both hemispheres 354.6
2809 Male, age 90, both hemispheres 294.7
2295 Male, age 66, both hemispheres 294.3
2820 Female, age 79, both hemispheres 231.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

854.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 854.6
Samples: 159

Max nTPM: 2055.1
Min nTPM: 183.1
Std nTPM: 365.7
Median nTPM: 839.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2055.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1918.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1907.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1843.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1722.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1707.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1541.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1509.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1479.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1476.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1450.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1421.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1408.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1400.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1377.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1360.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1332.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1321.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1317.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1273.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1261.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1255.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1247.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1231.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1202.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1181.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1171.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1166.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1161.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1146.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1143.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1128.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1082.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1070.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1070.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1069.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1065.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1054.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1053.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1052.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1031.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1029.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1029.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1028.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1023.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1017.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1016.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1014.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1008.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 989.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 987.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 976.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 975.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 962.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 961.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 960.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 952.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 941.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 939.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 930.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 928.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 916.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 916.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 908.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 905.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 894.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 887.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 881.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 880.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 880.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 880.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 880.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 878.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 878.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 868.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 866.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 861.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 856.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 854.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 839.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 835.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 808.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 800.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 787.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 776.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 775.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 768.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 760.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 759.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 757.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 747.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 719.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 717.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 707.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 702.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 700.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 695.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 692.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 688.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 688.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 685.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 678.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 675.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 675.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 673.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 668.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 667.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 665.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 663.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 659.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 650.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 650.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 649.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 641.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 641.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 638.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 633.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 632.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 623.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 618.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 610.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 607.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 606.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 575.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 564.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 560.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 556.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 545.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 538.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 525.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 523.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 519.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 518.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 514.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 503.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 493.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 490.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 466.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 460.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 458.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 456.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 445.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 394.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 383.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 372.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 360.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 357.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 351.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 351.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 350.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 348.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 335.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 313.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 278.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 273.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 237.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 196.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 187.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 183.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1838.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1838.8
FF:10159-103A6 76 years, female 2043.9
FF:10181-103D1 60 years, female 1633.6

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