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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:163.9 nTPM
HPA Brain:86.0 nTPM
GTEx:163.9 nTPM
FANTOM5:520.6 Scaled Tags Per Million
Pig:148.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.0
Sample id Sample description nTPM
Amygdala
nTPM: 86.0
2814 Male, age 76, right hemisphere 104.1
2514 Male, age 75, right hemisphere 89.5
1987 Female, age 91, left hemisphere 85.7
2695 Female, age 67, right hemisphere 79.2
2517 Female, age 94, left hemisphere 71.5
Basal amygdala
nTPM: 75.6
2243 Female, age 91, right hemisphere 92.4
2609 Male, age 75, right hemisphere 92.1
1955 Male, age 76, both hemispheres 81.9
2110 Male, age 80, left hemisphere 69.9
2685 Female, age 94, left hemisphere 61.9
2827 Female, age 67, right hemisphere 55.1
Central amygdala
nTPM: 73.7
1905 Male, age 76, both hemispheres 89.5
2239 Male, age 80, left hemisphere 83.6
2701 Female, age 91, right hemisphere 71.8
2515 Male, age 75, right hemisphere 69.6
2826 Female, age 94, left hemisphere 54.0
Corticomedial amygdala
nTPM: 85.3
2429 Female, age 94, left hemisphere 91.2
2535 Female, age 67, right hemisphere 90.1
2242 Female, age 91, right hemisphere 89.8
2240 Male, age 76, both hemispheres 82.5
2428 Male, age 75, right hemisphere 79.4
2829 Male, age 80, left hemisphere 79.0
Lateral amygdala
nTPM: 65.8
1883 Male, age 76, both hemispheres 89.0
2516 Male, age 75, right hemisphere 74.8
2534 Female, age 94, left hemisphere 63.9
2256 Male, age 80, left hemisphere 57.2
2255 Female, age 91, right hemisphere 55.3
2830 Female, age 67, right hemisphere 54.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 163.9
Samples: 152

Max nTPM: 370.6
Min nTPM: 65.3
Std nTPM: 51.3
Median nTPM: 155.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 370.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 335.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 329.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 308.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 274.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 265.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 264.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 264.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 260.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 258.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 254.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 248.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 236.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 234.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 225.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 224.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 224.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 224.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 222.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 214.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 214.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 214.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 213.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 211.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 209.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 208.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 201.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 199.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 198.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 197.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 196.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 196.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 194.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 192.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 191.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 191.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 190.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 189.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 188.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 184.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 182.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 177.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 177.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 177.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 176.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 175.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 175.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 174.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 173.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 173.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 172.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 171.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 171.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 171.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 170.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 170.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 170.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 169.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 168.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 167.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 166.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 165.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 163.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 163.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 161.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 160.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 159.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 158.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 155.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 155.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 155.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 152.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 152.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 152.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 150.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 149.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 149.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 148.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 147.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 147.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 147.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 146.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 144.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 144.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 144.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 143.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 143.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 143.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 143.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 142.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 142.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 141.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 140.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 140.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 139.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 138.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 137.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 136.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 135.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 134.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 132.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 131.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 130.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 129.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 129.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 128.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 128.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 126.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 126.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 124.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 123.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 122.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 120.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 119.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 118.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 118.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 115.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 114.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 112.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 111.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 107.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 103.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 99.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 97.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 93.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 93.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 86.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 77.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 67.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 65.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

520.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 520.6
FF:10151-102I7 76 years, female 520.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.0
Pig sample Sample description nTPM
Amygdala
nTPM: 148.0
Samples: 4

Max nTPM: 194.0
Min nTPM: 110.2
Sample A Female 194.0
Sample B Female 165.4
Sample C Male 122.2
Sample D Male 110.2

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