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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:96.1 nTPM
FANTOM5:475.2 Scaled Tags Per Million
Pig:209.7 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 76.2
2497 Male, age 66, unknown 79.2
2396 Male, age 61, right hemisphere 77.5
2032 Female, age 42, unknown 71.8
Centromedial thalamic nucleus
nTPM: 75.4
2401 Male, age 76, right hemisphere 96.8
2279 Female, age 85, left hemisphere 53.9
Habenula
nTPM: 96.1
1957 Male, age 80, both hemispheres 120.0
2203 Male, age 61, left hemisphere 113.7
2252 Male, age 62, unknown 79.8
2276 Male, age 66, unknown 71.0
Lateral geniculate body
nTPM: 89.6
1953 Male, age 62, unknown 115.8
2106 Female, age 67, right hemisphere 104.5
2399 Male, age 61, left hemisphere 91.3
2659 Male, age 66, unknown 90.5
2575 Female, age 94, right hemisphere 90.2
2841 Male, age 80, both hemispheres 77.8
2035 Female, age 72, unknown 77.2
2857 Male, age 74, right hemisphere 69.3
Lateral thalamic nuclei
nTPM: 84.8
2765 Female, age 67, both hemispheres 111.0
1903 Male, age 76, left hemisphere 96.0
2573 Female, age 94, left hemisphere 76.6
2577 Male, age 74, both hemispheres 73.9
2661 Female, age 72, unknown 66.6
Medial dorsal thalamic nucleus
nTPM: 85.1
2498 Male, age 66, unknown 115.1
1971 Male, age 61, right hemisphere 96.8
1810 Male, age 48, unknown 88.5
1859 Male, age 76, both hemispheres 88.2
2572 Female, age 94, right hemisphere 84.6
2026 Male, age 62, unknown 84.5
2039 Female, age 72, unknown 84.2
1930 Female, age 42, unknown 83.7
2576 Male, age 74, both hemispheres 78.3
2283 Male, age 80, right hemisphere 77.0
2492 Male, age 75, right hemisphere 76.3
2660 Female, age 72, unknown 75.4
2402 Female, age 67, both hemispheres 73.3
Medial geniculate body
nTPM: 79.2
1811 Female, age 42, unknown 93.5
2049 Male, age 76, both hemispheres 87.7
2657 Male, age 74, right hemisphere 84.6
2650 Female, age 94, left hemisphere 75.7
2207 Male, age 80, right hemisphere 74.3
2571 Male, age 75, right hemisphere 70.3
2217 Female, age 72, unknown 68.7
Nucleus reuniens
nTPM: 87.1
2212 Female, age 67, left hemisphere 105.3
2205 Male, age 80, left hemisphere 83.7
2210 Female, age 85, left hemisphere 72.4
Nucleus rhomboideus
nTPM: 75.7
2206 Male, age 80, both hemispheres 87.3
2213 Female, age 67, left hemisphere 80.1
2280 Female, age 85, left hemisphere 59.7
Posterior thalamic nucleus
nTPM: 77.1
2649 Female, age 94, both hemispheres 95.4
2495 Female, age 67, right hemisphere 82.0
2266 Male, age 76, right hemisphere 71.0
2655 Male, age 74, right hemisphere 59.8
Pulvinar
nTPM: 86.2
2724 Male, age 74, right hemisphere 108.9
1932 Male, age 80, right hemisphere 99.0
1972 Male, age 62, unknown 95.6
2398 Male, age 61, left hemisphere 93.9
1929 Male, age 48, unknown 83.6
2496 Female, age 67, right hemisphere 81.4
2499 Male, age 66, unknown 79.0
2214 Male, age 76, right hemisphere 77.9
1899 Female, age 42, unknown 74.3
2582 Female, age 72, unknown 68.7
Subthalamic nucleus
nTPM: 79.4
2406 Female, age 72, unknown 96.6
2124 Male, age 62, unknown 89.4
2658 Male, age 74, both hemispheres 85.6
2282 Male, age 61, both hemispheres 83.0
2779 Female, age 42, unknown 78.3
2275 Male, age 66, unknown 68.9
2056 Female, age 72, unknown 68.1
2216 Male, age 48, unknown 65.0
Ventral posterolateral thalamic nucleus
nTPM: 77.8
2570 Male, age 75, right hemisphere 90.9
2197 Male, age 80, both hemispheres 87.8
2397 Male, age 61, right hemisphere 79.8
2578 Male, age 74, both hemispheres 75.1
2740 Male, age 76, right hemisphere 74.7
2581 Female, age 72, unknown 58.4
Ventral posteromedial thalamic nucleus
nTPM: 78.0
2202 Male, age 61, left hemisphere 100.0
2758 Male, age 80, both hemispheres 77.3
2281 Male, age 75, right hemisphere 73.6
2127 Male, age 76, right hemisphere 73.5
2653 Male, age 74, both hemispheres 65.5
Ventral thalamic nuclei
nTPM: 83.5
1860 Male, age 76, both hemispheres 102.9
1845 Male, age 48, unknown 97.7
2204 Male, age 80, both hemispheres 88.6
1912 Female, age 42, unknown 87.1
2858 Female, age 72, unknown 81.7
2580 Male, age 66, unknown 78.3
2285 Male, age 62, unknown 74.4
2291 Female, age 72, unknown 73.3
2652 Male, age 74, left hemisphere 67.5
Zona incerta
nTPM: 78.6
2215 Male, age 66, unknown 86.1
2403 Male, age 62, unknown 84.3
2663 Female, age 72, unknown 77.4
2208 Male, age 80, right hemisphere 76.4
2822 Male, age 74, right hemisphere 69.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

475.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 475.2
FF:10154-103A1 76 years, female 475.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.7
Pig sample Sample description nTPM
Thalamus
nTPM: 209.7
Samples: 4

Max nTPM: 219.9
Min nTPM: 191.3
Sample A Female 219.9
Sample B Female 191.3
Sample C Male 218.3
Sample D Male 209.1

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