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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:787.8 nTPM
HPA:372.2 nTPM
GTEx:787.8 nTPM
FANTOM5:1085.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031085Antibody HPA053694
Glandular cells Not detectedMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.2
overview
Male, age 65
Small intestine sample 232
nTPM: 323.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 435.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 445.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 283.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

787.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 787.8
Samples: 187

Max nTPM: 2006.1
Min nTPM: 247.4
Std nTPM: 359.2
Median nTPM: 693.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2006.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1840.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1822.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1712.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1558.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1557.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1543.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1524.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1511.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1504.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1471.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1451.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1401.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1353.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1350.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1342.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 1335.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1326.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1318.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1301.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1292.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1243.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1241.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1234.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1231.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1227.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1221.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1205.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1202.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1190.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1164.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1163.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1161.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1145.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1142.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1138.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1125.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1118.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1113.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1109.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1099.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1082.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1073.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1048.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1034.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1032.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1031.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1023.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 991.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 988.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 958.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 956.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 955.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 947.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 944.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 942.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 935.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 929.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 916.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 896.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 882.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 872.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 869.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 864.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 862.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 860.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 858.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 844.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 842.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 840.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 838.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 821.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 815.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 815.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 813.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 803.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 798.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 795.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 790.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 789.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 779.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 758.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 754.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 746.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 737.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 731.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 731.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 727.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 722.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 711.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 705.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 705.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 697.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 693.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 691.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 690.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 687.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 678.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 675.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 670.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 666.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 655.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 654.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 650.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 648.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 642.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 631.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 631.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 625.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 622.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 620.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 619.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 617.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 611.2
GTEX-1192X-2526-SM-59868 50-59 years, male 608.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 600.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 578.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 578.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 573.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 568.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 565.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 563.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 560.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 559.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 557.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 554.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 550.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 548.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 541.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 540.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 539.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 538.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 536.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 533.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 531.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 527.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 527.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 526.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 525.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 522.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 521.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 514.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 512.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 511.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 507.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 503.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 502.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 502.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 497.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 490.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 481.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 473.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 467.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 456.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 454.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 453.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 450.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 449.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 445.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 442.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 440.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 434.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 433.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 424.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 422.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 416.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 407.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 397.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 397.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 396.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 387.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 387.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 383.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 371.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 369.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 363.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 357.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 355.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 353.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 313.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 311.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 303.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 277.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 274.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 269.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 263.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 247.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1085.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1085.1
FF:10024-101D6 15,40,85 years, mixed 1085.1

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