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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:618.3 nTPM
GTEx:618.3 nTPM
FANTOM5:1241.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031085Antibody HPA053694
Squamous epithelial cells Not detectedMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

618.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 618.3
Samples: 156

Max nTPM: 1852.4
Min nTPM: 112.8
Std nTPM: 310.2
Median nTPM: 529.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1852.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1844.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1427.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1394.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1363.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1346.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1346.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1313.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 1154.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1149.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1120.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1107.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1098.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1087.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1059.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1025.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 993.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 979.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 974.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 964.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 964.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 958.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 929.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 898.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 886.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 880.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 874.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 873.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 871.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 854.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 847.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 844.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 842.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 836.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 834.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 830.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 826.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 824.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 814.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 809.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 791.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 775.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 769.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 752.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 751.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 745.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 719.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 718.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 701.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 689.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 683.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 681.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 662.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 645.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 634.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 631.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 626.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 625.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 616.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 614.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 610.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 609.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 601.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 599.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 592.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 592.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 590.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 586.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 584.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 583.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 578.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 565.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 563.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 545.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 543.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 542.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 541.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 531.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 528.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 525.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 525.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 522.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 513.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 507.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 507.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 505.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 504.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 504.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 503.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 502.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 495.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 493.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 491.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 491.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 485.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 481.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 474.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 473.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 470.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 470.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 460.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 451.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 445.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 445.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 444.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 444.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 433.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 431.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 428.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 416.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 416.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 405.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 399.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 397.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 395.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 394.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 387.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 386.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 379.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 378.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 376.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 376.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 376.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 374.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 372.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 371.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 370.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 358.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 352.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 349.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 347.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 341.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 333.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 326.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 320.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 316.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 315.6
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 311.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 305.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 304.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 301.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 300.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 299.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 296.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 288.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 288.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 288.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 287.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 285.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 283.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 235.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 233.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 231.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 225.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 165.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 112.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1241.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1241.4
FF:10204-103F6 68 years, female 1241.4

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