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POLR2J3
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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:76.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.8
1854 Male, age 80, left hemisphere 76.9
2289 Male, age 61, right hemisphere 66.5
2288 Male, age 75, left hemisphere 66.4
2846 Female, age 79, unknown 65.0
2290 Female, age 72, unknown 60.1
1857 Female, age 85, left hemisphere 55.6
1781 Male, age 74, unknown 54.1
2481 Female, age 94, left hemisphere 50.1
Globus pallidus, externus
nTPM: 66.0
2567 Female, age 72, unknown 97.6
2646 Male, age 61, right hemisphere 79.2
2395 Male, age 75, both hemispheres 54.1
1996 Male, age 80, right hemisphere 50.3
2772 Female, age 79, unknown 48.9
Globus pallidus, internus
nTPM: 71.2
2566 Female, age 72, unknown 94.2
2111 Female, age 85, right hemisphere 86.0
2037 Male, age 80, right hemisphere 78.4
1818 Male, age 74, unknown 77.3
2778 Female, age 91, both hemispheres 63.1
2483 Female, age 94, right hemisphere 50.0
2287 Male, age 75, right hemisphere 49.4
Nucleus accumbens
nTPM: 65.8
2391 Female, age 94, left hemisphere 78.4
2698 Female, age 72, unknown 76.5
2732 Male, age 80, right hemisphere 72.4
1783 Male, age 74, unknown 67.1
1806 Female, age 85, left hemisphere 63.8
2824 Male, age 61, right hemisphere 61.4
1856 Female, age 91, right hemisphere 54.5
2286 Male, age 75, left hemisphere 52.1
Nucleus basalis of Meynert
nTPM: 76.1
2393 Male, age 80, right hemisphere 80.5
2569 Male, age 61, both hemispheres 77.8
2821 Male, age 75, both hemispheres 76.2
2484 Female, age 94, left hemisphere 70.1
Nucleus of the diagonal band
nTPM: 67.7
2195 Female, age 85, both hemispheres 78.9
1979 Male, age 74, unknown 74.5
2029 Male, age 61, right hemisphere 74.4
2775 Male, age 80, right hemisphere 60.0
1812 Female, age 91, both hemispheres 50.6
Putamen
nTPM: 72.2
2489 Female, age 72, unknown 94.1
2647 Male, age 75, left hemisphere 76.1
1838 Male, age 80, right hemisphere 73.4
1829 Male, age 74, unknown 71.1
2466 Female, age 79, unknown 68.9
2482 Female, age 94, left hemisphere 64.3
1937 Female, age 91, right hemisphere 57.7
Septal nuclei
nTPM: 73.5
2629 Female, age 94, right hemisphere 90.4
2199 Male, age 80, right hemisphere 85.3
2059 Female, age 85, both hemispheres 83.1
2394 Male, age 61, left hemisphere 76.0
2009 Female, age 91, both hemispheres 63.8
1960 Male, age 74, unknown 63.2
2031 Female, age 72, unknown 52.9
Stria terminalis, bed nucleus
nTPM: 73.2
2201 Male, age 74, unknown 89.3
2486 Female, age 94, both hemispheres 70.2
1974 Female, age 91, both hemispheres 60.3

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