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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
160.7
nTPM
FANTOM5:
4.4
Scaled Tags Per Million
Pig:
93.6
nTPM
Mouse:
0.2
nTPM
Allen mouse:
11.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
160.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 112.5
2019
Male, age 18, unknown
135.7
2219
Male, age 76, both hemispheres
128.9
2586
Male, age 75, left hemisphere
117.5
1830
Male, age 51, unknown
115.4
2411
Female, age 72, unknown
108.6
1833
Male, age 53, unknown
108.0
2828
Female, age 72, unknown
108.0
1827
Male, age 72, unknown
104.1
1870
Female, age 42, unknown
99.4
2666
Male, age 74, left hemisphere
99.2
Dorsal raphe nucleus nTPM: 150.3
2298
Female, age 72, unknown
217.8
2016
Female, age 72, unknown
185.1
1828
Male, age 53, unknown
142.2
2750
Male, age 76, both hemispheres
108.4
2047
Male, age 72, unknown
98.2
Inferior colliculus nTPM: 113.0
2097
Female, age 72, unknown
149.1
1890
Male, age 53, unknown
117.8
2849
Male, age 72, unknown
94.9
1848
Female, age 42, unknown
90.3
Median raphe nucleus nTPM: 97.6
2220
Male, age 76, midline
97.6
Periaquaductal grey, anterior nTPM: 130.0
2502
Female, age 75, unknown
144.9
1795
Male, age 51, unknown
133.3
1947
Male, age 18, unknown
111.7
Periaquaductal grey, dorsal nTPM: 139.4
1831
Male, age 72, unknown
174.1
2850
Male, age 76, both hemispheres
148.9
2464
Female, age 72, unknown
121.6
1840
Male, age 53, unknown
113.1
Periaquaductal grey, lateral nTPM: 160.7
2272
Male, age 74, both hemispheres
212.5
2140
Male, age 76, both hemispheres
156.7
2053
Male, age 18, unknown
112.7
Pretectal area nTPM: 125.3
2273
Male, age 74, both hemispheres
181.3
2224
Female, age 72, unknown
174.3
2316
Male, age 76, right hemisphere
131.7
1815
Male, age 53, unknown
123.3
2407
Male, age 75, both hemispheres
121.4
1816
Male, age 51, unknown
117.4
2007
Male, age 72, unknown
113.0
1817
Female, age 42, unknown
108.5
2667
Female, age 75, unknown
104.5
1944
Female, age 72, unknown
102.1
2825
Male, age 18, unknown
101.2
Red nucleus nTPM: 119.9
1865
Male, age 51, unknown
143.9
2769
Male, age 72, unknown
141.8
2227
Male, age 72, unknown
139.0
2785
Male, age 18, unknown
138.2
2503
Female, age 72, unknown
137.4
1904
Male, age 53, unknown
132.7
1954
Female, age 42, unknown
111.7
1821
Female, age 72, unknown
110.9
2725
Female, age 75, unknown
108.9
2823
Male, age 76, right hemisphere
108.1
2584
Male, age 75, left hemisphere
87.6
2588
Male, age 74, left hemisphere
78.9
Substantia nigra nTPM: 118.9
2699
Male, age 18, unknown
189.0
1851
Male, age 51, unknown
136.7
2665
Male, age 74, both hemispheres
136.1
1916
Female, age 42, unknown
115.9
2590
Female, age 75, unknown
111.7
2409
Female, age 72, unknown
102.7
1889
Female, age 72, unknown
102.1
1941
Male, age 53, unknown
100.7
2583
Male, age 75, right hemisphere
98.3
2241
Male, age 72, unknown
95.8
Superior colliculus nTPM: 132.4
1995
Male, age 72, unknown
175.1
1913
Female, age 42, unknown
163.7
2668
Female, age 75, unknown
153.8
1796
Male, age 53, unknown
140.4
2587
Male, age 74, left hemisphere
134.6
2664
Male, age 75, both hemispheres
130.0
2087
Female, age 72, unknown
121.3
2261
Male, age 18, unknown
109.1
1839
Male, age 51, unknown
100.3
1895
Male, age 76, right hemisphere
96.0
Ventral tegmental area nTPM: 144.7
1915
Female, age 42, unknown
169.7
2021
Male, age 53, unknown
162.8
2410
Female, age 72, unknown
143.1
2223
Female, age 72, unknown
140.1
1942
Male, age 51, unknown
127.9
2218
Male, age 76, both hemispheres
124.4
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.3
Samples: 4
Max nTPM: 1.0
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
1.0
Sample C
Female
0.0
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
