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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
181.2
nTPM
FANTOM5:
181.8
Scaled Tags Per Million
Pig:
74.9
nTPM
Mouse:
55.0
nTPM
Allen mouse:
17.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA001814
Glial cells
Low
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
181.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 175.2
1898
Male, age 80, left hemisphere
203.7
2529
Female, age 94, left hemisphere
187.0
1855
Male, age 76, left hemisphere
177.5
2621
Female, age 67, right hemisphere
172.7
2148
Female, age 91, left hemisphere
171.3
1911
Female, age 85, right hemisphere
139.1
Dentate gyrus nTPM: 181.2
2010
Male, age 76, both hemispheres
251.6
2528
Male, age 74, both hemispheres
187.8
2530
Female, age 94, left hemisphere
180.4
1927
Female, age 91, both hemispheres
162.9
2246
Female, age 85, both hemispheres
159.9
2531
Female, age 67, both hemispheres
144.9
Entorhinal gyrus nTPM: 157.8
2686
Male, age 75, right hemisphere
186.0
1938
Female, age 85, left hemisphere
165.9
2764
Male, age 80, right hemisphere
165.4
2117
Female, age 91, right hemisphere
163.2
1787
Male, age 76, left hemisphere
150.3
2613
Female, age 94, left hemisphere
115.9
Hippocampus, CA1 nTPM: 166.6
2527
Male, age 74, both hemispheres
196.9
2082
Female, age 91, right hemisphere
168.4
2045
Male, age 76, both hemispheres
160.9
1873
Female, age 85, both hemispheres
160.6
2749
Male, age 80, left hemisphere
146.1
Hippocampus, CA2 nTPM: 176.0
2249
Male, age 74, both hemispheres
241.5
2437
Female, age 94, left hemisphere
175.3
1963
Male, age 80, left hemisphere
174.1
1940
Female, age 85, left hemisphere
170.5
2113
Female, age 91, right hemisphere
156.3
1892
Male, age 76, both hemispheres
138.6
Hippocampus, CA3 nTPM: 169.6
2436
Male, age 74, both hemispheres
270.6
1867
Male, age 76, both hemispheres
186.5
2137
Male, age 80, left hemisphere
159.7
1891
Female, age 85, both hemispheres
136.9
2861
Female, age 67, both hemispheres
136.7
2620
Female, age 94, left hemisphere
127.3
Parahippocampal cortex nTPM: 158.4
2018
Male, age 76, both hemispheres
204.1
2250
Female, age 67, right hemisphere
194.7
2532
Female, age 72, left hemisphere
166.8
2245
Female, age 91, both hemispheres
165.8
1933
Female, age 85, both hemispheres
158.8
1990
Female, age 91, right hemisphere
154.8
1850
Male, age 80, both hemispheres
145.2
2692
Male, age 74, both hemispheres
136.5
2622
Female, age 67, right hemisphere
134.1
2693
Female, age 94, both hemispheres
122.9
Perirhinal gyrus nTPM: 149.1
1847
Female, age 91, left hemisphere
179.7
1841
Female, age 85, right hemisphere
164.7
2521
Female, age 94, right hemisphere
155.3
1794
Male, age 80, right hemisphere
138.6
2848
Male, age 76, right hemisphere
107.1
Subiculum nTPM: 161.2
2042
Male, age 76, both hemispheres
172.1
1977
Female, age 85, both hemispheres
166.5
1901
Male, age 80, both hemispheres
159.8
2438
Female, age 94, left hemisphere
159.7
2619
Male, age 74, both hemispheres
158.1
2729
Female, age 91, right hemisphere
151.2
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 55.0
Samples: 4
Max nTPM: 59.0
Min nTPM: 51.7
Sample A
Male
54.9
Sample B
Male
54.3
Sample C
Female
51.7
Sample D
Female
59.0
Hippocampal formation nTPM: 48.4
Samples: 4
Max nTPM: 49.2
Min nTPM: 47.2
Sample A
Male
48.5
Sample B
Male
48.8
Sample C
Female
49.2
Sample D
Female
47.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
