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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
284.8
nTPM
FANTOM5:
366.0
Scaled Tags Per Million
Pig:
102.2
nTPM
Mouse:
67.0
nTPM
Allen mouse:
11.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
284.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 189.6
2019
Male, age 18, unknown
237.9
2828
Female, age 72, unknown
227.0
1827
Male, age 72, unknown
223.7
2586
Male, age 75, left hemisphere
221.8
1870
Female, age 42, unknown
193.8
1833
Male, age 53, unknown
182.5
2411
Female, age 72, unknown
175.6
1830
Male, age 51, unknown
173.3
2666
Male, age 74, left hemisphere
149.9
2219
Male, age 76, both hemispheres
110.9
Dorsal raphe nucleus nTPM: 229.7
2047
Male, age 72, unknown
261.1
2298
Female, age 72, unknown
241.1
1828
Male, age 53, unknown
239.3
2016
Female, age 72, unknown
208.8
2750
Male, age 76, both hemispheres
198.4
Inferior colliculus nTPM: 219.4
1890
Male, age 53, unknown
229.0
2097
Female, age 72, unknown
222.6
1848
Female, age 42, unknown
213.1
2849
Male, age 72, unknown
213.0
Median raphe nucleus nTPM: 281.7
2220
Male, age 76, midline
281.7
Periaquaductal grey, anterior nTPM: 238.4
1795
Male, age 51, unknown
248.5
2502
Female, age 75, unknown
241.8
1947
Male, age 18, unknown
224.8
Periaquaductal grey, dorsal nTPM: 229.8
2850
Male, age 76, both hemispheres
325.0
1840
Male, age 53, unknown
230.0
1831
Male, age 72, unknown
191.3
2464
Female, age 72, unknown
172.8
Periaquaductal grey, lateral nTPM: 284.8
2140
Male, age 76, both hemispheres
379.3
2272
Male, age 74, both hemispheres
263.9
2053
Male, age 18, unknown
211.3
Pretectal area nTPM: 254.8
2407
Male, age 75, both hemispheres
414.4
1816
Male, age 51, unknown
276.0
1944
Female, age 72, unknown
268.7
2007
Male, age 72, unknown
268.3
2316
Male, age 76, right hemisphere
260.5
1817
Female, age 42, unknown
242.6
2273
Male, age 74, both hemispheres
241.2
2667
Female, age 75, unknown
224.5
2224
Female, age 72, unknown
213.3
2825
Male, age 18, unknown
200.8
1815
Male, age 53, unknown
192.0
Red nucleus nTPM: 198.8
2725
Female, age 75, unknown
261.8
2785
Male, age 18, unknown
226.6
1821
Female, age 72, unknown
206.1
2227
Male, age 72, unknown
203.2
2823
Male, age 76, right hemisphere
203.2
2769
Male, age 72, unknown
201.5
2503
Female, age 72, unknown
198.5
1954
Female, age 42, unknown
189.5
1904
Male, age 53, unknown
181.9
1865
Male, age 51, unknown
175.4
2584
Male, age 75, left hemisphere
170.7
2588
Male, age 74, left hemisphere
167.1
Substantia nigra nTPM: 235.4
1916
Female, age 42, unknown
327.4
1851
Male, age 51, unknown
269.3
1941
Male, age 53, unknown
256.8
1889
Female, age 72, unknown
244.1
2409
Female, age 72, unknown
233.3
2699
Male, age 18, unknown
223.1
2241
Male, age 72, unknown
213.4
2590
Female, age 75, unknown
207.6
2665
Male, age 74, both hemispheres
193.7
2583
Male, age 75, right hemisphere
185.3
Superior colliculus nTPM: 213.8
2664
Male, age 75, both hemispheres
292.4
2261
Male, age 18, unknown
255.6
1796
Male, age 53, unknown
249.8
2087
Female, age 72, unknown
248.4
2587
Male, age 74, left hemisphere
197.2
2668
Female, age 75, unknown
193.8
1839
Male, age 51, unknown
181.3
1995
Male, age 72, unknown
176.0
1913
Female, age 42, unknown
174.5
1895
Male, age 76, right hemisphere
168.6
Ventral tegmental area nTPM: 224.7
1915
Female, age 42, unknown
267.4
2218
Male, age 76, both hemispheres
234.8
1942
Male, age 51, unknown
232.5
2021
Male, age 53, unknown
215.7
2410
Female, age 72, unknown
206.7
2223
Female, age 72, unknown
191.4
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 67.0
Samples: 4
Max nTPM: 72.8
Min nTPM: 62.0
Sample A
Male
62.0
Sample B
Male
69.0
Sample C
Female
72.8
Sample D
Female
64.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
