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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:416.7 nTPM
HPA Brain:577.8 nTPM
GTEx:416.7 nTPM
FANTOM5:853.0 Scaled Tags Per Million
Pig:340.0 nTPM
Mouse:445.2 nTPM
Allen mouse:7.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

577.8
Sample id Sample description nTPM
Amygdala
nTPM: 577.8
2695 Female, age 67, right hemisphere 849.2
2514 Male, age 75, right hemisphere 603.8
2814 Male, age 76, right hemisphere 539.3
1987 Female, age 91, left hemisphere 448.5
2517 Female, age 94, left hemisphere 448.5
Basal amygdala
nTPM: 516.7
2609 Male, age 75, right hemisphere 846.4
2110 Male, age 80, left hemisphere 552.7
2243 Female, age 91, right hemisphere 484.9
1955 Male, age 76, both hemispheres 453.3
2685 Female, age 94, left hemisphere 386.0
2827 Female, age 67, right hemisphere 376.9
Central amygdala
nTPM: 521.8
2515 Male, age 75, right hemisphere 600.4
1905 Male, age 76, both hemispheres 543.4
2239 Male, age 80, left hemisphere 531.2
2701 Female, age 91, right hemisphere 471.5
2826 Female, age 94, left hemisphere 462.4
Corticomedial amygdala
nTPM: 475.7
2428 Male, age 75, right hemisphere 672.5
2829 Male, age 80, left hemisphere 623.1
2242 Female, age 91, right hemisphere 438.9
2240 Male, age 76, both hemispheres 411.9
2429 Female, age 94, left hemisphere 377.5
2535 Female, age 67, right hemisphere 330.2
Lateral amygdala
nTPM: 529.4
2516 Male, age 75, right hemisphere 761.9
2256 Male, age 80, left hemisphere 587.7
1883 Male, age 76, both hemispheres 500.6
2255 Female, age 91, right hemisphere 475.0
2830 Female, age 67, right hemisphere 460.9
2534 Female, age 94, left hemisphere 390.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

416.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 416.7
Samples: 152

Max nTPM: 1033.7
Min nTPM: 9.2
Std nTPM: 193.0
Median nTPM: 412.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1033.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 912.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 911.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 910.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 893.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 778.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 777.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 773.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 745.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 740.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 729.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 721.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 714.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 697.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 696.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 685.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 640.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 633.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 630.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 622.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 618.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 610.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 594.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 593.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 578.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 577.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 574.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 572.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 567.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 566.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 565.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 563.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 563.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 553.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 552.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 549.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 546.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 544.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 540.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 539.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 537.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 533.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 527.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 526.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 523.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 520.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 519.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 505.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 503.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 492.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 490.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 481.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 468.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 468.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 466.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 465.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 458.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 457.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 449.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 447.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 443.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 441.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 437.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 437.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 437.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 429.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 428.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 426.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 426.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 423.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 423.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 423.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 422.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 418.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 417.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 413.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 411.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 408.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 406.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 405.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 396.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 390.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 386.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 382.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 382.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 378.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 366.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 361.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 359.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 358.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 349.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 349.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 347.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 344.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 344.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 343.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 339.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 336.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 330.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 324.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 324.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 323.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 308.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 302.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 302.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 302.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 293.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 293.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 282.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 279.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 275.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 274.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 273.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 272.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 268.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 252.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 246.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 243.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 242.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 242.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 240.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 239.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 235.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 232.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 229.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 226.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 223.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 222.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 222.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 219.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 216.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 214.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 213.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 200.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 191.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 188.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 185.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 182.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 168.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 165.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 160.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 158.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 157.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 156.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 114.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 100.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 98.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 69.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 63.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

853.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 853.0
FF:10151-102I7 76 years, female 853.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.0
Pig sample Sample description nTPM
Amygdala
nTPM: 340.0
Samples: 4

Max nTPM: 372.5
Min nTPM: 310.2
Sample A Female 312.9
Sample B Female 310.2
Sample C Male 364.5
Sample D Male 372.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

445.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 445.3
Samples: 4

Max nTPM: 526.9
Min nTPM: 372.0
Sample A Male 413.6
Sample B Male 372.0
Sample C Female 526.9
Sample D Female 468.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.9
69173256 Antisense, RP_050329_01_C04, Mouse strain C57BL/6J (56 days, male) 7.9

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