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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
526.0
nTPM
FANTOM5:
1166.4
Scaled Tags Per Million
Pig:
483.7
nTPM
Allen mouse:
9.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
526.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 312.8
1984
Male, age 76, both hemispheres
453.9
2301
Female, age 85, both hemispheres
295.2
2090
Male, age 80, both hemispheres
283.6
2188
Female, age 91, both hemispheres
218.4
Dorsal cochlear nucleus nTPM: 526.0
2802
Male, age 74, right hemisphere
661.6
2370
Male, age 61, both hemispheres
596.7
2058
Male, age 76, both hemispheres
574.9
2378
Male, age 80, both hemispheres
485.1
2187
Female, age 91, both hemispheres
311.7
Dorsal tegmental nucleus nTPM: 394.0
1936
Male, age 76, left hemisphere
524.8
2083
Male, age 80, both hemispheres
501.1
2326
Male, age 74, both hemispheres
429.4
2358
Male, age 61, both hemispheres
120.7
Dorsolateral tegmental area nTPM: 370.9
2654
Male, age 80, both hemispheres
496.0
2751
Female, age 85, both hemispheres
480.3
2141
Male, age 76, both hemispheres
443.1
2360
Male, age 74, both hemispheres
348.8
2337
Male, age 61, both hemispheres
86.3
Kolliker-Fuse nucleus nTPM: 424.8
2315
Male, age 76, right hemisphere
617.1
2163
Male, age 80, both hemispheres
423.6
2793
Female, age 91, left hemisphere
233.9
Lateral lemniscal nuclei nTPM: 334.5
2169
Male, age 76, both hemispheres
458.4
2453
Male, age 74, right hemisphere
406.1
2036
Male, age 80, both hemispheres
298.0
2746
Female, age 85, left hemisphere
283.1
2320
Female, age 91, left hemisphere
226.7
Lateral parabrachial nucleus nTPM: 336.5
2139
Female, age 85, right hemisphere
477.7
2792
Male, age 76, both hemispheres
409.4
2013
Male, age 80, both hemispheres
341.3
2790
Male, age 61, both hemispheres
117.7
Lateral vestibular nucleus nTPM: 476.7
2184
Male, age 76, both hemispheres
547.0
2311
Male, age 80, both hemispheres
406.4
Locus coeruleus nTPM: 398.6
2317
Female, age 72, unknown
482.3
2788
Male, age 74, unknown
474.2
1980
Male, age 76, both hemispheres
399.5
2123
Female, age 91, both hemispheres
395.1
2014
Male, age 55, unknown
373.2
2720
Male, age 74, both hemispheres
336.1
2162
Male, age 80, both hemispheres
329.9
Medial parabrachial nucleus nTPM: 364.0
2786
Male, age 76, both hemispheres
480.0
2463
Female, age 85, right hemisphere
413.9
2854
Male, age 80, both hemispheres
355.1
2170
Female, age 91, both hemispheres
346.5
2156
Male, age 61, both hemispheres
224.5
Medial periolivary nuclei nTPM: 314.8
2063
Male, age 76, both hemispheres
419.0
2791
Male, age 74, right hemisphere
340.3
2171
Female, age 85, both hemispheres
321.1
2458
Female, age 91, both hemispheres
276.6
2081
Male, age 80, both hemispheres
217.0
Motor facial nucleus nTPM: 381.2
2795
Female, age 91, both hemispheres
759.7
2062
Male, age 76, both hemispheres
514.1
2126
Male, age 61, both hemispheres
331.4
2365
Male, age 74, right hemisphere
292.3
2327
Male, age 80, both hemispheres
217.3
2697
Female, age 85, both hemispheres
172.5
Motor trigeminal nucleus nTPM: 323.0
2309
Male, age 76, both hemispheres
519.0
2560
Male, age 74, both hemispheres
321.3
2335
Male, age 61, both hemispheres
281.6
2079
Male, age 80, both hemispheres
272.2
2321
Female, age 91, both hemispheres
220.7
Nuclei of the trapezoid body nTPM: 380.2
2368
Female, age 91, both hemispheres
493.1
1983
Male, age 76, both hemispheres
462.9
2159
Male, age 61, both hemispheres
371.1
2735
Female, age 85, both hemispheres
321.6
2166
Male, age 80, both hemispheres
252.3
Nucleus raphe magnus nTPM: 325.7
2051
Male, age 76, both hemispheres
443.9
2455
Male, age 74, both hemispheres
373.4
2160
Male, age 61, both hemispheres
329.4
2328
Male, age 80, both hemispheres
308.8
2459
Female, age 91, both hemispheres
304.8
2172
Female, age 85, both hemispheres
194.1
Paramedian reticular nucleus nTPM: 381.1
2052
Male, age 76, both hemispheres
409.4
2313
Male, age 61, both hemispheres
406.2
2057
Male, age 80, both hemispheres
391.6
2050
Female, age 85, both hemispheres
317.2
Pedunculopontine tegmental nucleus nTPM: 373.1
1921
Female, age 85, both hemispheres
520.0
2334
Male, age 80, both hemispheres
445.7
2338
Male, age 61, both hemispheres
153.5
Pontine nuclei nTPM: 279.5
1863
Male, age 55, unknown
410.7
1968
Male, age 76, left hemisphere
406.2
2109
Female, age 72, unknown
277.1
2787
Female, age 85, both hemispheres
238.4
2115
Male, age 80, left hemisphere
236.3
2727
Male, age 61, right hemisphere
230.9
2319
Female, age 91, both hemispheres
226.0
2454
Male, age 74, left hemisphere
210.2
Pontine raphe nucleus nTPM: 442.0
2853
Male, age 76, midline
551.7
2122
Female, age 85, midline
332.2
Posteroventral cochlear nucleus nTPM: 385.5
2371
Male, age 61, both hemispheres
620.9
2070
Male, age 76, both hemispheres
416.7
2752
Female, age 85, both hemispheres
399.1
2341
Male, age 80, both hemispheres
299.6
2135
Female, age 91, both hemispheres
191.0
Principal sensory trigeminal nucleus nTPM: 353.9
2324
Male, age 76, both hemispheres
659.9
2158
Male, age 61, both hemispheres
292.8
2008
Male, age 80, left hemisphere
273.2
2367
Female, age 91, left hemisphere
189.6
Reticular pontine nucleus, caudal nTPM: 340.5
2092
Male, age 76, both hemispheres
453.2
2457
Female, age 91, both hemispheres
326.5
2332
Male, age 80, right hemisphere
321.4
2559
Male, age 74, both hemispheres
260.8
Reticular pontine nucleus, oral nTPM: 371.9
2167
Male, age 76, both hemispheres
525.9
1939
Male, age 80, both hemispheres
506.4
2012
Female, age 85, both hemispheres
398.3
2366
Female, age 91, both hemispheres
238.1
2361
Male, age 74, both hemispheres
190.8
Reticulotegmental nucleus nTPM: 486.2
2333
Male, age 80, both hemispheres
529.8
2322
Female, age 91, both hemispheres
511.3
2325
Male, age 76, both hemispheres
483.1
2452
Male, age 74, both hemispheres
420.4
Spinal trigeminal nucleus, oral nTPM: 397.6
1978
Male, age 76, both hemispheres
464.2
2737
Female, age 85, both hemispheres
402.3
2164
Male, age 80, both hemispheres
326.4
Subcoeruleus area nTPM: 422.7
2369
Female, age 85, left hemisphere
510.0
2451
Male, age 74, both hemispheres
450.8
1958
Male, age 80, both hemispheres
404.5
2323
Female, age 91, left hemisphere
400.2
2089
Male, age 76, left hemisphere
347.8
Superior olive nTPM: 284.2
2020
Male, age 76, both hemispheres
325.0
2561
Female, age 91, both hemispheres
301.0
2364
Male, age 74, right hemisphere
286.3
2329
Male, age 80, right hemisphere
269.4
1875
Female, age 85, both hemispheres
239.4
Ventral periolivary nuclei nTPM: 306.9
2130
Female, age 85, both hemispheres
374.7
2165
Male, age 80, both hemispheres
350.8
2023
Male, age 76, both hemispheres
286.6
2794
Female, age 91, left hemisphere
215.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 343.5
2456
Female, age 91, both hemispheres
408.0
1959
Male, age 76, both hemispheres
380.1
2840
Female, age 85, both hemispheres
372.7
2449
Male, age 74, both hemispheres
326.6
2161
Male, age 80, both hemispheres
305.8
2359
Male, age 61, both hemispheres
268.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
483.7
Pig sample
Sample description
nTPM
Pons nTPM: 483.7
Samples: 4
Max nTPM: 590.1
Min nTPM: 406.1
Sample A
Female
484.4
Sample B
Female
406.1
Sample C
Male
454.1
Sample D
Male
590.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
