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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:247.1 nTPM
FANTOM5:926.7 Scaled Tags Per Million
Pig:84.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010592Antibody CAB002506Antibody CAB079994
Glial cells MediumLowMedium
Neuronal cells Not detectedLowNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 247.1
Samples: 246

Max nTPM: 1134.5
Min nTPM: 23.7
Std nTPM: 197.7
Median nTPM: 193.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1134.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1123.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1112.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1065.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 917.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 829.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 817.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 754.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 735.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 711.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 708.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 658.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 653.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 645.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 624.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 610.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 608.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 592.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 585.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 581.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 579.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 576.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 542.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 539.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 512.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 504.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 503.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 497.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 495.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 478.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 464.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 456.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 451.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 429.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 402.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 400.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 377.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 360.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 347.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 343.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 342.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 340.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 331.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 328.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 325.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 320.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 318.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 317.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 313.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 311.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 309.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 309.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 308.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 307.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 305.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 302.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 297.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 293.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 291.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 288.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 281.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 281.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 280.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 278.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 278.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 277.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 275.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 275.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 275.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 273.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 272.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 271.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 269.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 268.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 267.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 265.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 264.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 262.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 259.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 258.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 257.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 254.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 254.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 252.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 251.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 250.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 249.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 249.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 247.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 245.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 244.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 243.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 242.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 236.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 235.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 233.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 232.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 228.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 227.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 227.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 226.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 226.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 226.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 224.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 224.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 221.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 220.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 216.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 211.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 211.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 210.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 207.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 207.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 206.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 205.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 205.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 205.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 204.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 202.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 198.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 195.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 194.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 193.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 193.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 192.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 192.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 184.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 180.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 176.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 175.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 174.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 174.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 174.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 174.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 171.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 170.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 168.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 167.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 166.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 166.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 163.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 159.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 159.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 159.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 156.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 155.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 155.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 154.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 153.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 153.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 153.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 152.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 151.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 148.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 148.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 147.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 145.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 145.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 145.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 143.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 142.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 142.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 142.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 141.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 135.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 134.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 133.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 133.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 131.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 131.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 129.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 128.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 127.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 126.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 125.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 125.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 124.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 123.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 123.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 122.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 121.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 120.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 119.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 119.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 118.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 118.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 117.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 117.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 115.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 113.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 112.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 112.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 112.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 111.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 109.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 109.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 109.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 108.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 107.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 107.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 107.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 106.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 105.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 105.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 103.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 101.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 100.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 98.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 96.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 95.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 95.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 94.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 93.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 93.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 93.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 91.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 91.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 89.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 89.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 87.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 86.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 82.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 79.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 79.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 78.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 77.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 71.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 70.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 68.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 68.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 67.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 66.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 65.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 62.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 61.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 61.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 59.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 59.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 59.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 59.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 55.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 46.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 23.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

926.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 926.7
FF:10164-103B2 76 years, female 926.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.5
Pig sample Sample description nTPM
Caudate
nTPM: 84.5
Samples: 4

Max nTPM: 87.9
Min nTPM: 80.6
Sample A Female 80.6
Sample B Female 86.5
Sample C Male 82.9
Sample D Male 87.9

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