We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CD74
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CD74
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Low
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2432.5 nTPM
HPA:2432.5 nTPM
GTEx:1943.2 nTPM
FANTOM5:4431.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010592Antibody CAB002506Antibody CAB079994
Endocrine cells -Not detected-
Enterocytes -Low-
Enterocytes - Microvilli -Not detected-
Glandular cells High-Medium
Goblet cells -Not detected-
Paneth cells -High-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2432.5
overview
Male, age 65
Small intestine sample 232
nTPM: 2231
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2290
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2988.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2220.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1943.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1943.2
Samples: 187

Max nTPM: 6425.4
Min nTPM: 269.0
Std nTPM: 1169.5
Median nTPM: 1854.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 6425.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 4848.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4796.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4785.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 4473.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 4470.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 4387.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 4206.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 4203.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 4078.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3906.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3877.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3830.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3815.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3794.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3742.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3677.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3603.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3587.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3584.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3564.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3435.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3429.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3401.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3391.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3262.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3240.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3224.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3223.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3190.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3186.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 3169.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3145.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3120.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3110.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3020.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3014.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2973.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2915.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2801.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2801.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2715.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2688.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2671.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2614.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2608.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2582.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2564.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2551.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2526.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2525.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2525.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2524.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2513.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2443.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2388.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2384.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2378.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2349.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2333.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2330.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2328.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2302.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2301.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2270.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2264.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2260.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2259.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2257.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2236.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2205.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2175.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2151.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2142.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2141.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2127.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2109.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2097.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2055.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2050.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2025.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2013.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2008.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1956.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 1935.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1927.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1918.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1918.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1915.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1903.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1900.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1897.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1873.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1854.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1850.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1845.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1831.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1810.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1764.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1749.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1741.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1693.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1657.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1631.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1623.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1606.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1599.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1591.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1589.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1581.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1581.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1558.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1549.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1517.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1507.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1466.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1461.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1458.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1431.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1401.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1395.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1384.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1374.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1358.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1342.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1310.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1310.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1300.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1296.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1264.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1259.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1254.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1227.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1187.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1172.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1106.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1095.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1088.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1062.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1019.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 990.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 979.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 967.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 925.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 911.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 903.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 896.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 889.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 882.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 794.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 788.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 783.3
GTEX-1192X-2526-SM-59868 50-59 years, male 712.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 681.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 647.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 637.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 627.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 618.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 596.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 593.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 583.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 560.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 533.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 530.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 482.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 435.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 434.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 433.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 425.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 416.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 412.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 408.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 407.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 402.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 395.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 389.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 385.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 373.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 362.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 358.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 347.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 329.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 318.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 315.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 309.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 299.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 269.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4431.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 4431.3
FF:10024-101D6 15,40,85 years, mixed 4431.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org