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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:114.8 nTPM
FANTOM5:90.2 Scaled Tags Per Million
Pig:68.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001040Antibody HPA001391Antibody CAB020817
Glial cells Not detectedNot detectedLow
Neuronal cells MediumNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 114.8
Samples: 246

Max nTPM: 202.8
Min nTPM: 54.3
Std nTPM: 23.3
Median nTPM: 110.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 202.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 194.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 193.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 174.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 174.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 164.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 163.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 162.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 159.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 158.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 157.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 157.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 156.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 154.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 153.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 152.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 151.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 151.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 149.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 147.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 147.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 146.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 146.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 145.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 144.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 143.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 143.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 143.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 143.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 142.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 142.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 141.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 139.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 139.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 139.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 138.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 138.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 138.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 138.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 137.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 137.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 137.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 136.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 136.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 135.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 135.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 134.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 133.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 132.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 132.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 132.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 132.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 131.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 130.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 130.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 130.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 130.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 130.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 129.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 129.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 128.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 128.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 127.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 127.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 127.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 127.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 126.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 126.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 126.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 125.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 125.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 124.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 124.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 124.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 124.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 123.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 123.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 123.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 123.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 123.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 123.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 122.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 122.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 122.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 122.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 122.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 122.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 121.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 121.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 120.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 120.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 120.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 120.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 119.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 119.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 119.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 118.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 118.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 118.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 117.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 116.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 116.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 116.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 116.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 115.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 115.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 114.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 114.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 114.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 114.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 113.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 112.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 112.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 112.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 112.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 111.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 110.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 110.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 110.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 110.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 110.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 110.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 110.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 110.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 109.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 109.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 109.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 109.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 109.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 108.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 108.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 108.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 108.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 108.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 107.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 107.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 107.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 107.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 107.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 107.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 106.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 106.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 106.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 106.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 106.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 105.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 105.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 105.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 104.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 104.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 104.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 104.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 104.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 104.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 104.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 103.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 103.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 103.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 103.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 103.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 102.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 102.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 102.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 101.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 101.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 101.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 101.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 100.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 100.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 100.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 100.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 100.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 100.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 99.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 99.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 99.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 99.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 98.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 98.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 98.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 98.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 97.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 97.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 97.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 96.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 96.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 96.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 96.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 96.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 96.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 95.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 95.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 95.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 95.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 95.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 95.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 95.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 94.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 94.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 93.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 93.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 91.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 91.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 91.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 91.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 90.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 90.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 90.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 89.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 89.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 89.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 87.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 87.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 86.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 86.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 86.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 86.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 85.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 85.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 85.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 84.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 84.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 84.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 83.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 83.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 83.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 82.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 82.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 81.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 79.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 79.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 78.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 77.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 75.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 74.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 70.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 64.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 54.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 90.2
FF:10164-103B2 76 years, female 90.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.5
Pig sample Sample description nTPM
Caudate
nTPM: 68.5
Samples: 4

Max nTPM: 74.6
Min nTPM: 61.4
Sample A Female 65.3
Sample B Female 72.7
Sample C Male 74.6
Sample D Male 61.4

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