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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:412.3 nTPM
HPA Brain:243.9 nTPM
GTEx:412.3 nTPM
FANTOM5:405.5 Scaled Tags Per Million
Pig:183.9 nTPM
Mouse:26.4 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.9
Sample id Sample description nTPM
Amygdala
nTPM: 243.9
1987 Female, age 91, left hemisphere 402.3
2517 Female, age 94, left hemisphere 281.5
2514 Male, age 75, right hemisphere 263.8
2695 Female, age 67, right hemisphere 169.1
2814 Male, age 76, right hemisphere 102.8
Basal amygdala
nTPM: 194.9
2609 Male, age 75, right hemisphere 236.2
2685 Female, age 94, left hemisphere 231.0
2110 Male, age 80, left hemisphere 183.9
2827 Female, age 67, right hemisphere 179.8
1955 Male, age 76, both hemispheres 171.3
2243 Female, age 91, right hemisphere 167.3
Central amygdala
nTPM: 231.0
2826 Female, age 94, left hemisphere 368.1
2515 Male, age 75, right hemisphere 310.6
2701 Female, age 91, right hemisphere 163.1
1905 Male, age 76, both hemispheres 159.8
2239 Male, age 80, left hemisphere 153.5
Corticomedial amygdala
nTPM: 205.0
2242 Female, age 91, right hemisphere 341.8
2240 Male, age 76, both hemispheres 221.3
2428 Male, age 75, right hemisphere 219.7
2429 Female, age 94, left hemisphere 165.1
2535 Female, age 67, right hemisphere 159.3
2829 Male, age 80, left hemisphere 122.9
Lateral amygdala
nTPM: 224.0
2256 Male, age 80, left hemisphere 303.8
2534 Female, age 94, left hemisphere 278.6
2255 Female, age 91, right hemisphere 215.1
2830 Female, age 67, right hemisphere 204.6
2516 Male, age 75, right hemisphere 186.8
1883 Male, age 76, both hemispheres 155.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

412.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 412.3
Samples: 152

Max nTPM: 1218.4
Min nTPM: 85.4
Std nTPM: 204.5
Median nTPM: 371.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1218.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1201.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1130.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1108.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 983.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 916.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 864.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 863.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 821.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 816.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 792.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 780.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 738.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 719.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 694.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 644.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 623.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 617.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 616.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 614.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 588.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 579.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 571.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 568.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 549.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 536.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 536.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 510.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 507.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 507.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 506.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 505.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 497.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 478.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 476.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 475.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 475.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 474.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 474.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 470.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 460.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 453.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 448.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 447.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 446.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 445.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 444.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 433.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 428.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 422.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 422.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 420.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 419.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 415.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 413.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 413.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 412.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 411.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 409.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 407.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 406.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 403.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 403.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 399.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 396.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 390.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 382.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 382.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 382.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 381.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 380.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 379.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 377.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 376.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 375.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 373.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 369.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 362.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 361.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 358.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 358.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 357.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 355.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 355.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 354.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 352.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 350.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 346.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 343.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 342.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 341.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 339.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 330.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 327.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 325.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 320.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 311.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 309.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 309.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 308.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 303.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 300.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 299.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 298.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 297.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 293.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 290.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 288.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 286.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 283.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 282.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 281.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 279.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 278.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 276.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 275.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 270.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 270.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 268.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 265.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 265.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 263.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 262.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 262.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 257.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 256.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 249.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 248.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 248.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 243.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 243.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 242.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 235.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 232.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 229.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 228.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 224.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 222.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 218.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 215.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 214.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 214.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 212.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 195.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 190.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 173.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 170.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 168.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 167.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 136.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 85.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

405.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 405.5
FF:10151-102I7 76 years, female 405.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.9
Pig sample Sample description nTPM
Amygdala
nTPM: 183.9
Samples: 4

Max nTPM: 224.8
Min nTPM: 143.3
Sample A Female 224.8
Sample B Female 143.3
Sample C Male 210.6
Sample D Male 156.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.4
Samples: 4

Max nTPM: 29.3
Min nTPM: 23.5
Sample A Male 27.3
Sample B Male 23.5
Sample C Female 25.5
Sample D Female 29.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
79677375 Antisense, RP_071218_02_C11, Mouse strain C57BL/6J (56 days, male) 1.6
79677371 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 1.4
79907904 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 0.5
1310 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.3
1309 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.1

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