MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:194.1 nTPM
HPA Brain:202.3 nTPM
GTEx:194.1 nTPM
FANTOM5:613.2 Scaled Tags Per Million
Pig:668.4 nTPM
Mouse:27.0 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 202.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.2
2019 Male, age 18, unknown 127.9
1870 Female, age 42, unknown 99.4
2666 Male, age 74, left hemisphere 96.5
2828 Female, age 72, unknown 86.8
1830 Male, age 51, unknown 84.9
1833 Male, age 53, unknown 83.8
2411 Female, age 72, unknown 59.4
1827 Male, age 72, unknown 54.9
2219 Male, age 76, both hemispheres 40.5
2586 Male, age 75, left hemisphere 37.9
Dorsal raphe nucleus
nTPM: 165.0
2016 Female, age 72, unknown 279.3
2298 Female, age 72, unknown 214.5
1828 Male, age 53, unknown 152.8
2047 Male, age 72, unknown 101.8
2750 Male, age 76, both hemispheres 76.8
Inferior colliculus
nTPM: 84.4
1890 Male, age 53, unknown 137.7
2097 Female, age 72, unknown 76.4
2849 Male, age 72, unknown 61.9
1848 Female, age 42, unknown 61.5
Median raphe nucleus
nTPM: 82.7
2220 Male, age 76, midline 82.7
Periaquaductal grey, anterior
nTPM: 138.3
1795 Male, age 51, unknown 215.3
2502 Female, age 75, unknown 112.4
1947 Male, age 18, unknown 87.0
Periaquaductal grey, dorsal
nTPM: 167.5
2850 Male, age 76, both hemispheres 307.2
1831 Male, age 72, unknown 197.0
1840 Male, age 53, unknown 86.1
2464 Female, age 72, unknown 79.6
Periaquaductal grey, lateral
nTPM: 202.3
2272 Male, age 74, both hemispheres 276.7
2140 Male, age 76, both hemispheres 207.7
2053 Male, age 18, unknown 122.5
Pretectal area
nTPM: 96.0
2273 Male, age 74, both hemispheres 251.5
2224 Female, age 72, unknown 125.8
2316 Male, age 76, right hemisphere 99.1
2825 Male, age 18, unknown 89.7
1817 Female, age 42, unknown 81.5
1815 Male, age 53, unknown 76.7
2667 Female, age 75, unknown 71.5
2407 Male, age 75, both hemispheres 71.3
2007 Male, age 72, unknown 64.5
1816 Male, age 51, unknown 62.4
1944 Female, age 72, unknown 62.3
Red nucleus
nTPM: 108.4
2785 Male, age 18, unknown 131.3
2725 Female, age 75, unknown 121.9
2769 Male, age 72, unknown 118.7
2227 Male, age 72, unknown 117.7
1821 Female, age 72, unknown 113.9
1904 Male, age 53, unknown 112.7
2584 Male, age 75, left hemisphere 111.5
1954 Female, age 42, unknown 109.7
1865 Male, age 51, unknown 107.4
2503 Female, age 72, unknown 91.6
2588 Male, age 74, left hemisphere 83.5
2823 Male, age 76, right hemisphere 80.9
Substantia nigra
nTPM: 101.1
2590 Female, age 75, unknown 145.2
2665 Male, age 74, both hemispheres 137.8
2699 Male, age 18, unknown 130.6
1851 Male, age 51, unknown 125.5
2583 Male, age 75, right hemisphere 101.9
2409 Female, age 72, unknown 82.9
1941 Male, age 53, unknown 79.5
1916 Female, age 42, unknown 74.7
2241 Male, age 72, unknown 68.6
1889 Female, age 72, unknown 64.5
Superior colliculus
nTPM: 116.7
1995 Male, age 72, unknown 287.0
1913 Female, age 42, unknown 181.6
2587 Male, age 74, left hemisphere 139.6
2087 Female, age 72, unknown 108.8
2668 Female, age 75, unknown 84.2
1796 Male, age 53, unknown 84.1
2664 Male, age 75, both hemispheres 80.0
2261 Male, age 18, unknown 79.2
1839 Male, age 51, unknown 68.7
1895 Male, age 76, right hemisphere 53.8
Ventral tegmental area
nTPM: 126.8
1915 Female, age 42, unknown 171.4
2223 Female, age 72, unknown 165.3
2021 Male, age 53, unknown 156.4
1942 Male, age 51, unknown 98.6
2218 Male, age 76, both hemispheres 90.0
2410 Female, age 72, unknown 78.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 194.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 194.1
Samples: 139

Max nTPM: 1102.3
Min nTPM: 57.3
Std nTPM: 143.2
Median nTPM: 158.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1102.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 777.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 725.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 711.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 573.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 495.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 380.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 368.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 340.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 330.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 323.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 613.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 613.2
FF:10158-103A5 76 years, female 613.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 668.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 299.2
Samples: 4

Max nTPM: 750.3
Min nTPM: 86.7
Sample A Female 203.4
Sample B Female 750.3
Sample C Male 86.7
Sample D Male 156.5
Midbrain
nTPM: 120.8
Samples: 4

Max nTPM: 184.4
Min nTPM: 60.9
Sample A Female 184.4
Sample B Female 116.8
Sample C Male 121.0
Sample D Male 60.9
Periaqueductal gray
nTPM: 184.3
Samples: 3

Max nTPM: 222.9
Min nTPM: 156.7
Sample B Female 173.3
Sample C Male 222.9
Sample D Male 156.7
Superior colliculi
nTPM: 668.4
Samples: 4

Max nTPM: 1706.4
Min nTPM: 115.3
Sample A Female 736.2
Sample B Female 1706.4
Sample C Male 115.3
Sample D Male 115.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 33.6
Min nTPM: 23.5
Sample A Male 33.6
Sample B Male 25.5
Sample C Female 23.5
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
79677371 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 3.3
79677375 Antisense, RP_071218_02_C11, Mouse strain C57BL/6J (56 days, male) 2.9
1310 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 1.3
79907904 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 1.2
1309 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.4

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