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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:649.5 nTPM
GTEx:649.5 nTPM
FANTOM5:0.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048341Antibody HPA049988Antibody HPA055992Antibody CAB018772Antibody CAB036007
Squamous epithelial cells LowMediumHighHighHigh







VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

649.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 649.5
Samples: 156

Max nTPM: 3126.4
Min nTPM: 0.0
Std nTPM: 715.8
Median nTPM: 450.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3126.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3097.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2758.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2690.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2653.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2182.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2158.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2112.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1966.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1956.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1804.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1769.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1636.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1633.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1631.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1629.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1610.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1581.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1516.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1500.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1499.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1470.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1457.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1454.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1422.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1401.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1383.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1347.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1331.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1295.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1290.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1273.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 1261.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1239.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1209.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1200.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1200.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1049.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1046.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1040.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1027.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 992.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 984.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 975.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 950.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 914.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 909.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 880.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 863.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 858.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 815.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 800.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 797.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 788.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 785.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 743.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 735.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 708.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 706.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 696.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 689.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 683.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 667.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 658.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 642.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 594.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 560.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 541.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 528.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 512.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 502.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 499.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 499.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 483.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 482.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 475.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 457.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 454.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 445.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 440.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 437.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 420.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 367.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 359.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 327.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 318.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 303.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 300.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 300.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 298.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 295.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 264.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 260.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 252.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 225.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 223.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 207.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 206.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 163.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 162.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 155.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 153.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 120.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 117.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 87.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 70.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 36.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 32.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 22.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 22.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 21.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 19.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 17.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 15.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 15.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 14.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 13.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 13.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 12.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 4.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 4.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 4.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 0.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 0.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 0.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 0.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 0.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 0.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 0.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 0.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 0.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 0.9
FF:10204-103F6 68 years, female 0.9

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