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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1541.3 nTPM
HPA Brain:837.6 nTPM
GTEx:1541.3 nTPM
FANTOM5:936.9 Scaled Tags Per Million
Pig:1003.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

837.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 561.7
2565 Male, age 75, midline 683.6
2816 Male, age 47, midline 606.0
2048 Male, age 55, midline 521.5
2194 Female, age 79, both hemispheres 518.3
1981 Female, age 72, midline 479.3
Cervical spinal cord, dorsal horn
nTPM: 441.4
2173 Female, age 72, unknown 618.9
2296 Male, age 66, both hemispheres 610.6
1877 Male, age 55, unknown 426.0
2069 Male, age 47, both hemispheres 406.5
2721 Male, age 90, both hemispheres 303.6
2297 Male, age 75, both hemispheres 283.0
Cervical spinal cord, ventral horn
nTPM: 837.6
2480 Male, age 75, both hemispheres 1359.6
2809 Male, age 90, both hemispheres 980.6
2295 Male, age 66, both hemispheres 804.0
2820 Female, age 79, both hemispheres 764.2
2068 Male, age 55, unknown 694.9
2098 Female, age 72, unknown 422.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1541.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1541.3
Samples: 159

Max nTPM: 5096.0
Min nTPM: 324.8
Std nTPM: 811.3
Median nTPM: 1355.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 5096.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 4764.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4591.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3747.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3474.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3333.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3241.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3216.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3100.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3081.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2869.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2771.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2687.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2659.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2658.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2605.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2587.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2560.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2491.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2410.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2398.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2395.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2288.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2285.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2237.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2165.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2126.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2078.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1995.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1966.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1964.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1949.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1924.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1922.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1904.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1898.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1879.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1878.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1876.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1846.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1837.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1815.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1792.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1775.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1765.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1761.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1747.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1714.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1713.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1713.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1678.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1671.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1663.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1657.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1653.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1649.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1643.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1643.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1632.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1631.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1618.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1606.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1591.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1571.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1553.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1545.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1532.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1519.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1487.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1481.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1477.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1412.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1411.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1394.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1377.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1374.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1368.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1366.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1357.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1355.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1346.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1344.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1341.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1341.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1331.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1331.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1294.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1289.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1288.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1275.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1272.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1262.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1257.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1255.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1248.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1229.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1223.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1221.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1204.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1198.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1192.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1187.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1177.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1160.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1150.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1141.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1138.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1093.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1080.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1077.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1076.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1048.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1048.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1019.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1014.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1008.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1003.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 992.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 987.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 967.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 963.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 957.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 952.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 950.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 941.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 940.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 919.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 914.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 900.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 892.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 892.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 888.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 882.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 877.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 873.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 870.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 870.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 867.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 859.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 858.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 833.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 800.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 785.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 744.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 740.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 736.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 714.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 657.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 646.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 594.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 561.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 537.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 512.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 509.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 476.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 436.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 387.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 369.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 324.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

936.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 936.9
FF:10181-103D1 60 years, female 1062.4
FF:10159-103A6 76 years, female 811.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1003.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 770.1
Samples: 4

Max nTPM: 804.7
Min nTPM: 725.3
Sample A Female 752.0
Sample B Female 798.3
Sample C Male 725.3
Sample D Male 804.7
Ventral spinal cord
nTPM: 1003.3
Samples: 4

Max nTPM: 1234.5
Min nTPM: 907.7
Sample A Female 921.9
Sample B Female 948.9
Sample C Male 907.7
Sample D Male 1234.5

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