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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:243.3 nTPM
HPA Brain:253.8 nTPM
GTEx:243.3 nTPM
FANTOM5:870.6 Scaled Tags Per Million
Pig:211.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 214.7
2565 Male, age 75, midline 272.4
2194 Female, age 79, both hemispheres 247.9
2816 Male, age 47, midline 201.2
2048 Male, age 55, midline 183.5
1981 Female, age 72, midline 168.5
Cervical spinal cord, dorsal horn
nTPM: 175.4
2721 Male, age 90, both hemispheres 203.3
2173 Female, age 72, unknown 195.8
1877 Male, age 55, unknown 192.7
2069 Male, age 47, both hemispheres 166.1
2296 Male, age 66, both hemispheres 160.2
2297 Male, age 75, both hemispheres 134.6
Cervical spinal cord, ventral horn
nTPM: 253.8
2809 Male, age 90, both hemispheres 325.6
2295 Male, age 66, both hemispheres 269.1
2480 Male, age 75, both hemispheres 253.3
2098 Female, age 72, unknown 232.3
2820 Female, age 79, both hemispheres 230.5
2068 Male, age 55, unknown 211.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 243.3
Samples: 159

Max nTPM: 682.1
Min nTPM: 110.7
Std nTPM: 79.0
Median nTPM: 222.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 682.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 513.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 412.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 410.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 401.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 392.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 390.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 383.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 371.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 368.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 362.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 354.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 347.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 346.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 343.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 341.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 337.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 336.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 331.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 331.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 330.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 330.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 329.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 329.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 328.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 328.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 324.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 320.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 314.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 314.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 312.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 305.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 304.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 302.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 301.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 301.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 299.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 298.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 295.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 294.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 292.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 289.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 285.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 283.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 274.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 271.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 269.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 266.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 265.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 264.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 263.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 262.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 261.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 261.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 259.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 259.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 257.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 257.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 255.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 254.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 254.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 253.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 250.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 245.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 243.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 239.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 238.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 236.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 235.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 232.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 232.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 231.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 230.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 229.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 226.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 225.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 225.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 224.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 224.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 222.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 222.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 222.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 221.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 221.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 221.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 220.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 220.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 220.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 217.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 215.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 215.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 215.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 215.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 214.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 214.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 211.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 209.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 208.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 207.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 207.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 206.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 205.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 205.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 204.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 203.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 201.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 200.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 199.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 198.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 198.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 196.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 196.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 193.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 192.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 192.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 192.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 192.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 192.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 190.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 187.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 187.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 185.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 184.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 182.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 182.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 181.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 181.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 181.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 180.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 176.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 173.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 173.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 173.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 171.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 170.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 168.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 168.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 165.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 164.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 163.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 162.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 161.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 160.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 158.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 157.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 156.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 149.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 142.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 141.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 140.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 140.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 137.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 137.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 136.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 130.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 116.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 110.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

870.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 870.6
FF:10159-103A6 76 years, female 949.2
FF:10181-103D1 60 years, female 792.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 211.8
Samples: 4

Max nTPM: 265.6
Min nTPM: 142.5
Sample A Female 142.5
Sample B Female 247.6
Sample C Male 265.6
Sample D Male 191.4
Ventral spinal cord
nTPM: 196.8
Samples: 4

Max nTPM: 218.1
Min nTPM: 179.8
Sample A Female 179.8
Sample B Female 182.0
Sample C Male 207.1
Sample D Male 218.1

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