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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:214.3 nTPM
HPA:145.2 nTPM
GTEx:214.3 nTPM
FANTOM5:159.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031531
Glandular cells Medium

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.2
overview
Male, age 65
Small intestine sample 232
nTPM: 129.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 151.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 148.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 151.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 214.3
Samples: 187

Max nTPM: 354.5
Min nTPM: 141.4
Std nTPM: 38.0
Median nTPM: 207.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 354.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 342.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 327.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 321.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 319.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 313.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 298.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 293.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 292.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 290.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 288.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 285.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 282.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 274.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 274.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 270.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 270.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 268.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 268.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 268.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 268.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 267.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 266.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 262.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 261.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 259.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 258.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 253.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 253.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 249.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 248.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 248.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 246.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 246.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 245.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 245.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 244.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 239.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 238.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 238.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 238.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 236.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 232.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 232.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 232.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 229.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 227.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 227.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 226.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 226.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 225.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 225.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 225.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 224.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 224.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 223.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 221.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 221.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 221.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 221.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 220.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 220.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 219.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 218.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 217.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 216.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 216.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 215.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 215.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 214.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 214.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 214.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 214.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 214.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 213.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 212.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 212.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 212.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 212.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 212.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 212.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 212.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 212.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 212.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 211.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 211.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 211.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 211.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 210.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 209.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 209.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 208.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 208.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 207.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 207.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 207.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 207.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 206.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 206.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 206.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 204.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 204.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 204.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 204.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 202.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 202.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 202.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 202.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 201.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 201.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 200.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 200.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 200.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 199.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 199.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 199.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 198.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 197.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 197.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 197.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 196.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 195.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 195.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 194.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 194.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 194.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 193.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 192.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 192.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 191.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 190.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 190.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 190.0
GTEX-1192X-2526-SM-59868 50-59 years, male 189.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 188.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 188.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 188.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 187.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 187.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 186.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 186.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 186.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 185.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 185.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 184.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 183.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 183.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 183.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 183.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 182.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 181.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 181.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 181.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 181.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 181.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 181.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 180.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 179.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 179.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 179.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 179.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 179.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 179.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 178.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 178.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 178.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 177.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 177.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 176.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 175.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 175.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 174.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 173.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 173.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 173.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 172.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 172.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 172.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 170.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 166.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 166.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 165.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 164.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 153.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 147.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 141.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 141.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 159.0
FF:10024-101D6 15,40,85 years, mixed 159.0

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