We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CAPZB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CAPZB
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:152.9 nTPM
HPA Brain:104.0 nTPM
GTEx:152.9 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:146.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.7
1981 Female, age 72, midline 110.4
2194 Female, age 79, both hemispheres 101.4
2816 Male, age 47, midline 92.3
2565 Male, age 75, midline 91.8
2048 Male, age 55, midline 82.7
Cervical spinal cord, dorsal horn
nTPM: 104.0
2173 Female, age 72, unknown 113.1
2069 Male, age 47, both hemispheres 110.5
2297 Male, age 75, both hemispheres 106.5
2296 Male, age 66, both hemispheres 105.4
2721 Male, age 90, both hemispheres 97.2
1877 Male, age 55, unknown 91.2
Cervical spinal cord, ventral horn
nTPM: 103.6
2098 Female, age 72, unknown 128.2
2295 Male, age 66, both hemispheres 102.6
2809 Male, age 90, both hemispheres 102.2
2480 Male, age 75, both hemispheres 102.0
2820 Female, age 79, both hemispheres 97.1
2068 Male, age 55, unknown 89.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 152.9
Samples: 159

Max nTPM: 220.8
Min nTPM: 95.4
Std nTPM: 22.4
Median nTPM: 152.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 220.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 208.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 207.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 199.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 198.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 195.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 190.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 190.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 187.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 186.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 182.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 182.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 181.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 180.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 180.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 180.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 179.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 178.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 178.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 178.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 177.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 177.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 177.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 177.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 177.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 176.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 175.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 174.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 174.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 172.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 172.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 172.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 170.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 170.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 170.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 169.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 169.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 169.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 169.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 169.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 167.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 167.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 167.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 165.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 165.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 164.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 163.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 161.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 161.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 160.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 160.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 160.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 160.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 160.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 160.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 160.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 160.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 159.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 158.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 158.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 158.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 158.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 158.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 157.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 157.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 157.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 156.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 155.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 155.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 155.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 154.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 154.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 154.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 154.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 153.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 153.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 152.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 152.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 152.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 151.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 150.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 150.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 150.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 149.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 149.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 148.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 148.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 147.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 147.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 146.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 146.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 145.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 145.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 144.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 144.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 144.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 144.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 143.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 143.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 142.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 142.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 142.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 142.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 142.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 141.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 141.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 140.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 140.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 140.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 139.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 139.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 139.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 137.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 137.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 136.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 135.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 135.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 135.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 135.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 134.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 134.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 134.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 133.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 133.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 133.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 131.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 130.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 129.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 129.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 129.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 129.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 128.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 128.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 127.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 126.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 125.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 123.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 123.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 122.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 120.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 120.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 120.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 117.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 114.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 112.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 108.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 102.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 95.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 72.5
FF:10159-103A6 76 years, female 81.9
FF:10181-103D1 60 years, female 63.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 134.7
Samples: 4

Max nTPM: 163.1
Min nTPM: 115.5
Sample A Female 115.5
Sample B Female 125.1
Sample C Male 163.1
Sample D Male 135.1
Ventral spinal cord
nTPM: 146.9
Samples: 4

Max nTPM: 170.8
Min nTPM: 135.1
Sample A Female 138.8
Sample B Female 142.7
Sample C Male 170.8
Sample D Male 135.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org