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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:483.8 nTPM
FANTOM5:254.4 Scaled Tags Per Million
Pig:155.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055878Antibody HPA061979
Glial cells Not detectedMedium
Neuronal cells MediumMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

483.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 483.8
Samples: 246

Max nTPM: 1312.0
Min nTPM: 223.5
Std nTPM: 141.7
Median nTPM: 455.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1312.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1170.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 963.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 957.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 864.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 824.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 813.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 812.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 795.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 788.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 781.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 772.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 768.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 699.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 697.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 687.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 682.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 674.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 671.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 663.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 660.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 653.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 651.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 649.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 647.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 642.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 640.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 638.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 637.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 630.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 622.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 620.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 606.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 604.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 604.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 603.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 599.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 598.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 598.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 596.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 593.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 589.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 586.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 582.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 580.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 579.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 577.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 577.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 571.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 566.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 562.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 562.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 555.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 555.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 551.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 550.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 549.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 549.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 549.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 547.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 546.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 546.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 545.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 543.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 539.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 539.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 538.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 538.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 537.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 535.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 534.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 531.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 525.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 523.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 523.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 522.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 522.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 522.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 520.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 519.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 516.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 515.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 514.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 513.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 512.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 511.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 509.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 508.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 508.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 506.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 506.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 499.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 494.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 494.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 494.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 494.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 491.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 488.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 488.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 486.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 484.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 483.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 482.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 482.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 482.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 482.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 480.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 476.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 474.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 470.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 469.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 467.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 467.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 467.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 465.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 464.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 463.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 462.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 461.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 461.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 461.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 457.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 456.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 455.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 452.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 452.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 450.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 450.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 450.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 449.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 447.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 446.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 445.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 444.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 442.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 440.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 440.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 437.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 437.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 436.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 435.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 434.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 433.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 433.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 432.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 429.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 429.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 429.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 427.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 427.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 424.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 423.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 422.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 421.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 421.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 418.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 416.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 415.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 414.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 413.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 413.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 413.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 413.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 412.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 412.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 407.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 407.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 407.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 407.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 407.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 407.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 407.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 406.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 406.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 406.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 404.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 403.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 402.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 401.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 401.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 399.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 399.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 396.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 395.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 392.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 391.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 390.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 388.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 387.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 386.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 381.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 381.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 380.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 379.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 379.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 377.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 374.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 374.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 372.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 372.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 370.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 369.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 368.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 365.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 362.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 362.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 359.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 358.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 358.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 358.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 357.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 357.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 356.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 353.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 352.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 351.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 351.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 348.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 348.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 348.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 347.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 347.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 347.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 346.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 346.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 344.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 339.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 337.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 335.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 330.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 327.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 327.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 324.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 316.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 312.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 310.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 308.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 305.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 302.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 291.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 291.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 286.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 269.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 263.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 247.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 223.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

254.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 254.4
FF:10164-103B2 76 years, female 254.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.1
Pig sample Sample description nTPM
Caudate
nTPM: 155.1
Samples: 4

Max nTPM: 173.2
Min nTPM: 129.5
Sample A Female 149.6
Sample B Female 168.0
Sample C Male 173.2
Sample D Male 129.5

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