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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:880.2 nTPM
HPA:541.9 nTPM
GTEx:880.2 nTPM
FANTOM5:541.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055878Antibody HPA061979
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells Medium-
Paneth cells Low-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

541.9
overview
Male, age 65
Small intestine sample 232
nTPM: 690.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 518.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 494.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 464.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

880.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 880.2
Samples: 187

Max nTPM: 2031.2
Min nTPM: 395.9
Std nTPM: 250.5
Median nTPM: 837.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2031.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1608.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1544.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1538.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1470.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1466.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1427.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1412.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1365.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1308.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1308.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1304.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1301.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1289.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1283.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1254.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1228.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 1224.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1215.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1200.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1190.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1154.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1148.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1139.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1128.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1126.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1126.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1126.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1123.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1119.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1113.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1100.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1094.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1093.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1078.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1057.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1054.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1051.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1050.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1044.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1044.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1042.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1040.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1026.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1024.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1023.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1022.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1018.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1006.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1003.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 998.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 996.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 993.1
GTEX-1192X-2526-SM-59868 50-59 years, male 988.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 983.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 978.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 975.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 967.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 966.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 958.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 956.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 955.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 952.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 943.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 940.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 934.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 933.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 931.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 929.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 928.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 926.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 922.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 921.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 918.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 917.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 913.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 911.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 901.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 899.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 894.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 894.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 889.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 883.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 869.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 866.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 860.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 855.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 854.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 846.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 841.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 840.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 838.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 838.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 837.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 835.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 831.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 830.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 829.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 821.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 818.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 817.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 816.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 816.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 812.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 808.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 807.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 806.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 802.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 802.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 798.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 793.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 791.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 785.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 784.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 780.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 779.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 778.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 777.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 776.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 769.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 766.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 764.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 761.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 754.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 753.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 753.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 751.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 746.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 744.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 742.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 734.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 733.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 732.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 731.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 719.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 718.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 715.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 711.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 710.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 709.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 701.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 701.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 699.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 695.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 692.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 691.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 690.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 687.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 686.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 684.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 681.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 679.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 678.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 674.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 674.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 666.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 666.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 665.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 653.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 652.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 635.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 634.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 625.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 614.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 601.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 601.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 596.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 590.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 584.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 580.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 561.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 558.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 549.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 549.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 548.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 546.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 544.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 538.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 534.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 532.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 517.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 503.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 493.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 492.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 483.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 414.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 395.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

541.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 541.8
FF:10024-101D6 15,40,85 years, mixed 541.8

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