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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1263.3 nTPM
GTEx:1263.3 nTPM
FANTOM5:1114.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055878Antibody HPA061979
Squamous epithelial cells HighMedium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1263.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1263.3
Samples: 156

Max nTPM: 3088.9
Min nTPM: 622.7
Std nTPM: 392.4
Median nTPM: 1201.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3088.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2906.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2676.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2343.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2217.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2021.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1996.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1967.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1959.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1935.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1880.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1841.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1796.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1728.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1724.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1724.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1719.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1690.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1632.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1612.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1610.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1601.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1590.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1590.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1565.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1554.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1545.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1531.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1529.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1525.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1524.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1514.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1492.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1487.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1476.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1465.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1446.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1445.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1430.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1423.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1419.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1412.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1411.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1404.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1400.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1395.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1393.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1374.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1368.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1368.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1361.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1355.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1355.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1352.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1333.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1314.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1299.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1295.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1291.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1283.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1255.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1247.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1246.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1246.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1245.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1244.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1237.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1236.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1235.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1234.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1227.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1221.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1214.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1208.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1208.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1204.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1203.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1201.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1200.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1192.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1189.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1185.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1180.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1180.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1175.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1171.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1168.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1153.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1150.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1146.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1146.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1142.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1140.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1132.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1130.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1129.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1123.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1091.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1083.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1074.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1072.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1066.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1065.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1050.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1049.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1048.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1035.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1030.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1020.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1019.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1011.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1011.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1010.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1009.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1002.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1001.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1001.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1000.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 989.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 983.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 980.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 976.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 974.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 973.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 969.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 963.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 960.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 960.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 959.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 959.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 950.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 942.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 928.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 925.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 924.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 911.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 894.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 874.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 871.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 868.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 867.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 856.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 855.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 831.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 823.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 820.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 806.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 806.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 784.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 777.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 751.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 742.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 718.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 698.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 656.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 622.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1114.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1114.9
FF:10204-103F6 68 years, female 1114.9

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