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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:253.6 nTPM
FANTOM5:255.5 Scaled Tags Per Million
Pig:26.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026494Antibody CAB001448
Glial cells LowNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 253.6
Samples: 246

Max nTPM: 579.0
Min nTPM: 111.3
Std nTPM: 77.9
Median nTPM: 238.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 579.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 557.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 507.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 486.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 477.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 474.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 468.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 461.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 445.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 437.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 425.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 421.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 416.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 400.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 391.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 390.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 382.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 381.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 380.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 377.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 377.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 373.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 370.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 367.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 365.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 363.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 363.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 356.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 356.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 342.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 339.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 338.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 333.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 329.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 328.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 328.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 328.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 323.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 321.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 321.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 318.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 316.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 310.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 307.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 306.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 305.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 304.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 303.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 300.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 299.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 297.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 295.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 293.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 292.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 291.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 291.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 291.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 291.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 290.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 287.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 287.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 285.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 284.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 284.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 282.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 278.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 277.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 276.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 276.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 275.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 275.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 275.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 275.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 275.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 274.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 273.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 272.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 272.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 269.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 269.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 265.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 264.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 264.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 264.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 262.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 261.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 261.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 261.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 260.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 258.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 257.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 257.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 256.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 254.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 253.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 252.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 251.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 251.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 250.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 250.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 249.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 248.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 248.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 248.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 248.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 248.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 246.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 246.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 246.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 244.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 243.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 242.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 242.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 242.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 242.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 241.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 240.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 240.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 240.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 240.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 239.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 239.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 239.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 237.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 237.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 237.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 236.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 236.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 234.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 233.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 232.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 231.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 231.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 230.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 230.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 230.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 229.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 229.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 229.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 229.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 228.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 224.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 222.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 222.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 221.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 221.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 220.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 219.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 219.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 218.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 218.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 218.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 217.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 217.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 217.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 217.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 216.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 216.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 215.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 214.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 213.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 212.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 212.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 211.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 210.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 210.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 210.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 210.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 210.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 209.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 209.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 209.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 207.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 205.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 203.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 203.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 203.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 203.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 203.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 202.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 201.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 201.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 200.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 200.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 199.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 199.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 199.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 198.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 198.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 197.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 197.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 197.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 197.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 196.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 196.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 195.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 194.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 194.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 193.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 193.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 191.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 191.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 191.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 189.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 187.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 185.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 185.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 184.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 184.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 183.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 183.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 183.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 183.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 182.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 181.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 180.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 177.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 176.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 176.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 175.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 175.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 174.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 173.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 173.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 172.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 171.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 170.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 170.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 170.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 169.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 169.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 168.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 167.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 167.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 166.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 164.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 161.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 160.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 157.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 154.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 152.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 152.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 133.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 123.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 116.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 111.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

255.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 255.5
FF:10164-103B2 76 years, female 255.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.7
Pig sample Sample description nTPM
Caudate
nTPM: 26.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 20.6
Sample A Female 38.3
Sample B Female 22.5
Sample C Male 25.4
Sample D Male 20.6

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