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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:103.6 nTPM
HPA Brain:105.6 nTPM
GTEx:103.6 nTPM
FANTOM5:148.1 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:116.2 nTPM
Allen mouse:13.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.6
Sample id Sample description nTPM
Amygdala
nTPM: 105.6
2695 Female, age 67, right hemisphere 122.9
2814 Male, age 76, right hemisphere 111.3
2514 Male, age 75, right hemisphere 99.9
2517 Female, age 94, left hemisphere 99.5
1987 Female, age 91, left hemisphere 94.5
Basal amygdala
nTPM: 96.6
2609 Male, age 75, right hemisphere 120.7
2685 Female, age 94, left hemisphere 105.4
2110 Male, age 80, left hemisphere 92.9
1955 Male, age 76, both hemispheres 92.6
2827 Female, age 67, right hemisphere 85.3
2243 Female, age 91, right hemisphere 82.6
Central amygdala
nTPM: 100.4
1905 Male, age 76, both hemispheres 109.7
2515 Male, age 75, right hemisphere 106.3
2826 Female, age 94, left hemisphere 104.8
2701 Female, age 91, right hemisphere 94.2
2239 Male, age 80, left hemisphere 87.1
Corticomedial amygdala
nTPM: 84.6
2428 Male, age 75, right hemisphere 102.2
2829 Male, age 80, left hemisphere 98.4
2429 Female, age 94, left hemisphere 87.0
2240 Male, age 76, both hemispheres 75.2
2242 Female, age 91, right hemisphere 74.4
2535 Female, age 67, right hemisphere 70.6
Lateral amygdala
nTPM: 101.0
2830 Female, age 67, right hemisphere 108.6
2516 Male, age 75, right hemisphere 105.7
1883 Male, age 76, both hemispheres 101.9
2255 Female, age 91, right hemisphere 101.1
2534 Female, age 94, left hemisphere 96.5
2256 Male, age 80, left hemisphere 92.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 103.6
Samples: 152

Max nTPM: 159.1
Min nTPM: 62.5
Std nTPM: 14.5
Median nTPM: 101.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 159.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 149.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 140.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 137.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 132.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 132.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 130.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 127.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 126.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 125.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 125.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 125.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 123.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 123.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 123.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 122.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 121.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 120.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 120.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 119.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 118.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 118.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 117.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 117.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 116.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 115.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 115.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 115.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 114.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 113.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 113.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 113.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 112.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 112.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 111.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 111.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 110.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 109.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 109.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 109.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 109.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 109.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 109.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 108.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 107.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 106.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 106.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 106.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 105.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 105.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 105.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 104.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 104.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 104.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 104.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 103.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 103.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 103.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 103.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 102.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 102.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 102.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 101.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 101.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 101.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 101.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 100.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 100.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 99.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 99.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 99.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 98.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 98.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 96.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 96.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 96.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 96.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 96.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 95.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 95.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 95.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 95.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 95.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 95.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 94.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 94.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 94.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 93.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 93.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 93.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 93.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 92.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 92.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 91.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 91.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 90.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 89.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 89.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 89.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 88.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 87.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 86.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 86.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 86.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 85.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 85.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 84.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 81.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 81.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 81.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 78.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 62.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

148.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 148.1
FF:10151-102I7 76 years, female 148.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.4
Pig sample Sample description nTPM
Amygdala
nTPM: 58.4
Samples: 4

Max nTPM: 76.5
Min nTPM: 50.3
Sample A Female 76.5
Sample B Female 50.3
Sample C Male 53.1
Sample D Male 53.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 116.2
Samples: 4

Max nTPM: 126.0
Min nTPM: 111.5
Sample A Male 126.0
Sample B Male 113.0
Sample C Female 111.5
Sample D Female 114.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.5
74988735 Antisense, RP_060315_04_B03, Mouse strain C57BL/6J (56 days, male) 14.7
70593345 Antisense, RP_050407_04_A05, Mouse strain C57BL/6J (56 days, male) 12.2

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