MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.8 nTPM
HPA Brain:109.6 nTPM
GTEx:106.8 nTPM
FANTOM5:213.7 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:114.0 nTPM
Allen mouse:9.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.8
2828 Female, age 72, unknown 122.1
2411 Female, age 72, unknown 118.6
1827 Male, age 72, unknown 117.9
2586 Male, age 75, left hemisphere 113.5
1870 Female, age 42, unknown 107.9
1833 Male, age 53, unknown 107.4
2019 Male, age 18, unknown 103.4
2666 Male, age 74, left hemisphere 99.3
1830 Male, age 51, unknown 97.2
2219 Male, age 76, both hemispheres 90.4
Dorsal raphe nucleus
nTPM: 108.5
2298 Female, age 72, unknown 126.3
2016 Female, age 72, unknown 109.7
2047 Male, age 72, unknown 106.2
2750 Male, age 76, both hemispheres 100.9
1828 Male, age 53, unknown 99.4
Inferior colliculus
nTPM: 98.0
2849 Male, age 72, unknown 108.1
1848 Female, age 42, unknown 102.3
2097 Female, age 72, unknown 91.4
1890 Male, age 53, unknown 90.3
Median raphe nucleus
nTPM: 97.7
2220 Male, age 76, midline 97.7
Periaquaductal grey, anterior
nTPM: 106.3
1947 Male, age 18, unknown 111.8
1795 Male, age 51, unknown 105.4
2502 Female, age 75, unknown 101.7
Periaquaductal grey, dorsal
nTPM: 104.6
2850 Male, age 76, both hemispheres 111.8
1840 Male, age 53, unknown 109.0
1831 Male, age 72, unknown 99.3
2464 Female, age 72, unknown 98.5
Periaquaductal grey, lateral
nTPM: 105.5
2272 Male, age 74, both hemispheres 113.1
2053 Male, age 18, unknown 103.0
2140 Male, age 76, both hemispheres 100.4
Pretectal area
nTPM: 109.6
1816 Male, age 51, unknown 122.8
2007 Male, age 72, unknown 120.6
1817 Female, age 42, unknown 118.7
1815 Male, age 53, unknown 114.7
2316 Male, age 76, right hemisphere 113.7
2667 Female, age 75, unknown 112.7
2273 Male, age 74, both hemispheres 108.3
2825 Male, age 18, unknown 106.0
2224 Female, age 72, unknown 101.7
1944 Female, age 72, unknown 99.9
2407 Male, age 75, both hemispheres 86.8
Red nucleus
nTPM: 108.1
1821 Female, age 72, unknown 114.2
2725 Female, age 75, unknown 113.2
2588 Male, age 74, left hemisphere 113.0
2823 Male, age 76, right hemisphere 112.7
2503 Female, age 72, unknown 111.9
1904 Male, age 53, unknown 111.1
1954 Female, age 42, unknown 107.8
1865 Male, age 51, unknown 107.0
2785 Male, age 18, unknown 106.9
2227 Male, age 72, unknown 102.9
2769 Male, age 72, unknown 102.5
2584 Male, age 75, left hemisphere 94.3
Substantia nigra
nTPM: 104.7
1851 Male, age 51, unknown 114.4
2665 Male, age 74, both hemispheres 112.3
2590 Female, age 75, unknown 110.9
2583 Male, age 75, right hemisphere 109.1
1916 Female, age 42, unknown 108.5
1941 Male, age 53, unknown 108.0
1889 Female, age 72, unknown 105.9
2699 Male, age 18, unknown 101.7
2409 Female, age 72, unknown 91.5
2241 Male, age 72, unknown 85.2
Superior colliculus
nTPM: 107.6
2587 Male, age 74, left hemisphere 121.8
1913 Female, age 42, unknown 117.1
1995 Male, age 72, unknown 115.6
2261 Male, age 18, unknown 115.2
1796 Male, age 53, unknown 110.4
1895 Male, age 76, right hemisphere 105.4
1839 Male, age 51, unknown 102.3
2668 Female, age 75, unknown 97.3
2087 Female, age 72, unknown 95.6
2664 Male, age 75, both hemispheres 95.0
Ventral tegmental area
nTPM: 102.3
2410 Female, age 72, unknown 120.8
1915 Female, age 42, unknown 106.1
2021 Male, age 53, unknown 99.8
1942 Male, age 51, unknown 97.2
2218 Male, age 76, both hemispheres 95.6
2223 Female, age 72, unknown 94.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 106.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.8
Samples: 139

Max nTPM: 193.4
Min nTPM: 77.3
Std nTPM: 21.6
Median nTPM: 101.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 193.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 187.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 175.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 166.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 166.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 163.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 159.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 153.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 152.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 151.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 142.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 213.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.7
FF:10158-103A5 76 years, female 213.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.5
Samples: 4

Max nTPM: 78.2
Min nTPM: 67.5
Sample A Female 78.2
Sample B Female 67.5
Sample C Male 76.5
Sample D Male 75.7
Midbrain
nTPM: 83.0
Samples: 4

Max nTPM: 110.5
Min nTPM: 69.1
Sample A Female 110.5
Sample B Female 69.1
Sample C Male 82.3
Sample D Male 70.2
Periaqueductal gray
nTPM: 74.3
Samples: 3

Max nTPM: 80.9
Min nTPM: 68.3
Sample B Female 73.8
Sample C Male 80.9
Sample D Male 68.3
Superior colliculi
nTPM: 82.8
Samples: 4

Max nTPM: 89.5
Min nTPM: 78.4
Sample A Female 89.5
Sample B Female 79.4
Sample C Male 83.9
Sample D Male 78.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.0
Samples: 4

Max nTPM: 116.7
Min nTPM: 108.7
Sample A Male 116.3
Sample B Male 108.7
Sample C Female 114.4
Sample D Female 116.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
74988735 Antisense, RP_060315_04_B03, Mouse strain C57BL/6J (56 days, male) 11.4
70593345 Antisense, RP_050407_04_A05, Mouse strain C57BL/6J (56 days, male) 8.4

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